| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2084 |
|---|
| Symbol | |
|---|
| ID | 6409744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 2256285 |
|---|
| End bp | 2257460 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642711969 |
|---|
| Product | 6-aminohexanoate-dimer hydrolase |
|---|
| Protein accession | YP_001991081 |
|---|
| Protein GI | 192290476 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.113455 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCCTT CCGATCTCGC CGCGCCGGAG GACGCATCTG GCGCCACGCT CGCGAACTGG
CGCGAGCTGC CGTTCAGCCG CTGGTCGTTC CGCAATATCG ATGCCCTGAT CCCGACCGAG
GCGATCGCCA ACGCGCCCGA CGATATTTGG TCACTGCCGG CTGCACCGCG CGCGCTTAAT
GAGTTTCGCG TCCGTGCCCA GGGCGGCGGA ATACTCGACC TGGAAGGCTT TCTCGCTGCC
ACCGACACCG ACGCGCTGGT CGTGCTCAAG GACGGCAGGA TCGCGATCGA GGCCTACGCC
AACGGCACCA CTGCAGCGAC GCCGCATATT ATCATGTCGG CATCGAAGTC GATCACCGGG
CTGATCGCCG GCATTCTCAG CGAGCGGGGC CATCTGCAGC TCGACGCCGA GGTGACGAAG
CTGATCCCGG AAGTGGCAGA CACCGCCTAT CAAGGCGCGA CATTGCGGCA GATGCTCGAC
ATGCGGACCG GCATCCAGAT CGACCTCGAC GCCCAGCGCG CTTATGCGGT TGCCGCCGGC
TGGGATCCAG TCCCTGAGGA CTTGCCGCCG ACCGATCTGA AGACGTTCTA TCGCAGTTTC
ACGATCAAGC CGCAGCCGCA TGGCGGGGCA TTCCGCTATG TCTCTGCCAA CACCGATCTG
CTCGGCTGGG CGATCGAACG CGCCACCGGC ACCCGCTTTA CGACGCTGGT GTCCGACCTG
TTGTGGCGGC CACTCGGCGC CGAGCAGCCC GCCTCGATCA CCACCGATCG GCAGGGCCAG
GCTCGCGCCA CTGGCGGCTT CAGCATGGTA GCACGCGATT TCGCGCGTAT CGGCCAGATG
ATGCTCGACG ACGGCTGCCG TGACGGCCGC ATCATCGTTC CGCCGTCATG GATCGACGAT
CTGTGGACCG GCGGAGACCA GGATGCGTGG CGACAGGGCG AGTGGCAGAA ATTGTTCCCG
TACCGGAATT TCAGCTATCG CGGCAGCTGG TATGTGATTC ACGATGAGCC GAAGACGATG
TTCGCTATGG GAATTCACGG ACAGAATCTG TTCATCGATC CGAAGAACCG GCTGGTGATC
GCCAAACTAT CGTCGCAGGG CGCAGCGGTC GACAATGCGG CCTGGGCAGT GACGCATCGC
GCACTGCCGG AGTTTTGCCG CTGCCTCGCC TCGTGA
|
|---|
| Protein sequence | MSPSDLAAPE DASGATLANW RELPFSRWSF RNIDALIPTE AIANAPDDIW SLPAAPRALN
EFRVRAQGGG ILDLEGFLAA TDTDALVVLK DGRIAIEAYA NGTTAATPHI IMSASKSITG
LIAGILSERG HLQLDAEVTK LIPEVADTAY QGATLRQMLD MRTGIQIDLD AQRAYAVAAG
WDPVPEDLPP TDLKTFYRSF TIKPQPHGGA FRYVSANTDL LGWAIERATG TRFTTLVSDL
LWRPLGAEQP ASITTDRQGQ ARATGGFSMV ARDFARIGQM MLDDGCRDGR IIVPPSWIDD
LWTGGDQDAW RQGEWQKLFP YRNFSYRGSW YVIHDEPKTM FAMGIHGQNL FIDPKNRLVI
AKLSSQGAAV DNAAWAVTHR ALPEFCRCLA S
|
|---|
| |