| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2049 |
|---|
| Symbol | |
|---|
| ID | 6409709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 2220561 |
|---|
| End bp | 2222855 |
|---|
| Gene Length | 2295 bp |
|---|
| Protein Length | 764 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642711935 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001991047 |
|---|
| Protein GI | 192290442 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.379645 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAACT TCAAGGCTAG CAACAATCGT TTGTATTTGG GCGTCGCGAC CGGCGTGCTG
ACGCTGTGCG CGGCCGGCCT CGCGCCGTCC TCGGCACCTG CCCAGGAGTC CGAAGCGCGC
GTGTTGCCGC CGGTCTCGGT CGACGCTCCG CAGCAGCGCG CGGCGACCCG CACCGCGCAG
CCACGCGCCA CGCCGCAGCG CGCCGTGCGG GTAGCGCCGC GCCGCGCCGC CGAGCCGCCG
CCCCCACCGG CCGCGCCGCC GACAACGATG GGCTCGACCC GCACCATCGG CGCGCCGGCG
CCGGCCTATG CGGGCGGCCA GGTGGCGCAG GGCGGCACGC TCGGCCTGCT CGGCGCGACC
AGCGTGATGA ATACGCCGTT CTCGACCGTC AACTTCACCT CGCAGCTGAT CGAAGACCAG
CAGGCGCGCA CCGCCGCCGA CACGCTGGTC AACGACTCGT CGGTGCGCAC CACGACCAGC
AGCAACGGCT TCGACGACAC CTTCATCATT CGCGGATTCC CCGTGAACGC CACCGACGTC
GGCCTTAACG GTCTGTACGG CCTGGCGTCG TCGCAGCGTG TGCCGGCGCA GATCATCGAA
CGGATCGAGC TGCTCAAGGG TCCCGGCGCG CTGATCAACG GCATCGCGCC GAGCGGAGCC
GTCGGCGGCG GCATCAACAT CGTCACCAAG CGTGCTACTG ACGAGCCGTT CTCGCGACTG
ACGCCGTTCT TCATGAGCGC GGCGAATTAC GGACTGCATC TCGAGACCAG CCAACGGTTC
GGCGCCAACA AGGAGTGGGG CGTTCGCTTC AACGGCGTTG GTCGTAACGG TGAAGCCTCG
ATCAGGGACG GAAATTTCCA GTCGGGTCTG GGTGCGGTGG CGATCGACTA TCGCGGCGAT
CGGCTTCGCT GGACGCTCGA TCTATTCTCG CAAAACGACA ACACCGACAA CTTCCGCCCG
CAGATCAGCC TGTTGCCGAC CGCCACTGCG ATTCCGGCGC CGCCCGATGC CCGCAGCAAC
TGGTATCCCG ACACGAGGCT GCGCCAGAAG GACAACACGG CCGCAACCGG TTTGGAATAC
GACCTGACCA ACTGGCTGAC CGCCTATGCG GGTGTTGGCT ATCGTGATGG CTCGAACTAC
CAGACCTTCC CGCGCTCGGC GACGGCGGTC GATGCGCTGG GCAATTTCCA GGTTCAGAAC
ACCTATTACG ATTCCTACAG CAAGACCTTG AGCGGCAATG TGGGCTTCCG GTCGCGGTTC
GACACCGGGT TCATCGGCCA CAAGCTCAAC GTCGCCTATA CCGGATTCTT CCAGGAGGCG
GGCAACGCCT ACATCCAGGG CGGCACGACC GCGTCCAATA TCTACAACCC GGCACCGCTT
CCGGCGGTGA CACTCGACCG ATACTCGCCG CGGCACGCCT CCGACAGCAC GCTGACCAGC
GTCGCGGTGG TCGACACCAT GTCGTTCCTG AACGAGACCG TTCTTCTGAC GGTCGGCGGG
CGGCACCAGA TGGTGAAGCA GGAGAGCTAC GCAACCACCG GTACCAACGT CGGCGCATTG
ACATCGACTT ACGACGCCAG CGCCACGACA CCGCTAGCCG GCATCGTTGT CAAGCCGTGG
AACAACGTGT CGCTGTATGC CAACTACGCC GAGGGGCTCA CACGCGGCAC CATCGTCGGC
GGCAACTTCT CGAATGCTGG CACGATCCTG GCGCCGTACA AGTCGAAGCA ACAGGAGGCC
GGCGTCAAGG TCGACTGGGG CACCATCACC ACCACCGCAG CGGTGTTCCA GATCGCCCGT
CCCAGCCTGA TCACCACGGC GGCCAATGCG CAGGCCTACG ACGGCGAGCA GCGCAACCGA
GGCCTGGAGT TGAACGTCTA TGGCCTGATC CTGCCCGGCC TGCGCGGCAT GGCGAGCGCG
ACGTTCATCA ACCCCGAACT GACCAATCCG ACCGACCCGA CGCAGCGTGG CAATGCCGCG
GCAGGCGTGC CTGACAAGGC GTTCTCTGCC GGGCTCGACT GGGATACGCC GTGGGTCCGC
GGACTCGCGC TTAACGGTCG AGTGATCCAC ACCGGAAGCG CCTATCTCAC GACGGCGAAC
ACGCTGAGCT TCCCGGGCTG GACTCGTCTC GACATCGGCG CGCGCTACAC CACGACGGCA
CTCACCGGCA AGCCGGTCAC GTTCCGCGCC AACATCGAGA ACGTCACCGG CGAGACCTAC
TGGCTGACCA CCGGCACCTA CGTGACGGTA GGCGCGCCAC GCACTTACTT GCTCTCGGCT
GCGTTCGATT TCTGA
|
|---|
| Protein sequence | MSNFKASNNR LYLGVATGVL TLCAAGLAPS SAPAQESEAR VLPPVSVDAP QQRAATRTAQ
PRATPQRAVR VAPRRAAEPP PPPAAPPTTM GSTRTIGAPA PAYAGGQVAQ GGTLGLLGAT
SVMNTPFSTV NFTSQLIEDQ QARTAADTLV NDSSVRTTTS SNGFDDTFII RGFPVNATDV
GLNGLYGLAS SQRVPAQIIE RIELLKGPGA LINGIAPSGA VGGGINIVTK RATDEPFSRL
TPFFMSAANY GLHLETSQRF GANKEWGVRF NGVGRNGEAS IRDGNFQSGL GAVAIDYRGD
RLRWTLDLFS QNDNTDNFRP QISLLPTATA IPAPPDARSN WYPDTRLRQK DNTAATGLEY
DLTNWLTAYA GVGYRDGSNY QTFPRSATAV DALGNFQVQN TYYDSYSKTL SGNVGFRSRF
DTGFIGHKLN VAYTGFFQEA GNAYIQGGTT ASNIYNPAPL PAVTLDRYSP RHASDSTLTS
VAVVDTMSFL NETVLLTVGG RHQMVKQESY ATTGTNVGAL TSTYDASATT PLAGIVVKPW
NNVSLYANYA EGLTRGTIVG GNFSNAGTIL APYKSKQQEA GVKVDWGTIT TTAAVFQIAR
PSLITTAANA QAYDGEQRNR GLELNVYGLI LPGLRGMASA TFINPELTNP TDPTQRGNAA
AGVPDKAFSA GLDWDTPWVR GLALNGRVIH TGSAYLTTAN TLSFPGWTRL DIGARYTTTA
LTGKPVTFRA NIENVTGETY WLTTGTYVTV GAPRTYLLSA AFDF
|
|---|
| |