| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2022 |
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| Symbol | |
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| ID | 6409682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2194307 |
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| End bp | 2194876 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642711908 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001991020 |
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| Protein GI | 192290415 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.80309 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGAGTACCA AGCAGGCAGC CACCGACGAC GTCCTGATCG CCAGGATCGC CCAGGGGGAC
CGGGTCGCGA TGCAGGTCCT GTATGGACGG CATCACGTCA AAGTCTTCCG GTTCGGACTG
CGCCTCGTTC GGAACGAACA GATCGCCGAG GATCTTATCA GCGAAGTCTT CCTCGACGTC
TGGCGTCAGG CCGGCAAGTT CGAGGGACGG TCTTCGGTTT CAACCTGGCT GCTGGCGATT
ACGCGGTTCA AGGCGCTATC GGCGCTGCGA CGGCGTAAGG ACGCCGAACT GGACGACGAG
GCCGCCGCTG CGATCGAGGA TCCTTCCGAC GATCCGGAGA TCGCGGTGCA GAAGAAGGAC
ACAGGCGAAG CTCTGCGGAA GTGCCTGACC TCACTGACGC CCGAGCATCG AGAGATCGTC
GATCTGGTGT ACTACCATGA GAAATCCATC GAAGAAGTCG CCGAGATCGT CGGAATTCCG
GAGAACACGG TGAAAACCCG ACTGTTCTAC GCACGCAAGA AACTCGCCGA TCTGCTGCAG
GCGGCCGGCG TGCAGCGAGG CTGGCCATGA
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| Protein sequence | MSTKQAATDD VLIARIAQGD RVAMQVLYGR HHVKVFRFGL RLVRNEQIAE DLISEVFLDV
WRQAGKFEGR SSVSTWLLAI TRFKALSALR RRKDAELDDE AAAAIEDPSD DPEIAVQKKD
TGEALRKCLT SLTPEHREIV DLVYYHEKSI EEVAEIVGIP ENTVKTRLFY ARKKLADLLQ
AAGVQRGWP
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