Gene Rpal_2017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2017 
Symbol 
ID6409677 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp2188215 
End bp2188853 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content71% 
IMG OID642711903 
Productprotein of unknown function DUF1109 
Protein accessionYP_001991015 
Protein GI192290410 
COG category[S] Function unknown 
COG ID[COG4944] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.274146 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAACCG ATCGCCTGAT CCAAGCGCTC GCCGCCGACG GCGCCAGCCG CGACCGCCCA 
GTTGGGCAGG TGCTGGCTGC TGCGCTGCTG GTGGCGTTGC CGGTGTCGGC GGCCTTGCTG 
CTGACGACGC TCGGCCTGCG CCCCGACCTG CACCAGGCGA TGCGCAATCC GTTCTTCGAT 
CTGAAATTCG TGGTGACGCT GGCGCTGTCG CTATCGGCGA TCATCGTCGC GCTGCATCTG 
TCGCGCCCCG AGGCGACGGC GAAAGGCTGG CGCCTGTTGC TGCTCGCGCC ACTGGCGGTC 
CTCGGCCTCG CGATCGGCGT CGAAGCGATG CTGCCGCATC GCACCTCGGC GATGACGCGG 
CTGCTCGGCC ACAACTCGCT GCTGTGTCTC GGCTCGATTC CGGCATTGTC GCTGCCGATT 
CTCGGCGCTG CGCTGCTCGG GCTGCGCCGT GGCGCGCCGT CGCGTCCGGC GCTCGCCGGC 
GCGCTCGCCG GCATGCTGTC GGCCGGGCTC GCCGGCACGC TGTATGCCGC GCATTGCGTC 
GACGATTCCC CGCTGTTCGT TGCCACCTGG TACACGCTGG CGACCGCGAT GGTTGCCGGC 
CTCGGCGCCC TGCTGGGGCG GCGGGTGCTG CGTTACTGA
 
Protein sequence
METDRLIQAL AADGASRDRP VGQVLAAALL VALPVSAALL LTTLGLRPDL HQAMRNPFFD 
LKFVVTLALS LSAIIVALHL SRPEATAKGW RLLLLAPLAV LGLAIGVEAM LPHRTSAMTR 
LLGHNSLLCL GSIPALSLPI LGAALLGLRR GAPSRPALAG ALAGMLSAGL AGTLYAAHCV 
DDSPLFVATW YTLATAMVAG LGALLGRRVL RY