| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2016 |
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| Symbol | |
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| ID | 6409676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2187667 |
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| End bp | 2188212 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642711902 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001991014 |
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| Protein GI | 192290409 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.365491 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGCGCGGAC GTGACGACGA ATGGACCGAC CTGATGCGGT CAGCCAATGC CGGCGACAGC
ATCGCGTATC GGCGCCTGCT CGAGAGTGTC ACCCCGGTGC TGCGCGCAGG TGCGCGGCGC
GGTCTCGCCC GCGCCGGACA GCCTGTCGAT CAGGCCGAGG ACATCGTGCA GGACATTCTT
CTTGCGGTGC ATCTGAAGCG GCAAACCTGG GATCCCGGCG CGCCGTTCGC ACCGTGGCTG
TTCGCGATCG CTCGCAACAA GCTGATCGAT ACGCTGCGTC GCCGCGGCCG CCGGGTGTTC
GTCGATATCG ACGACTTCGC CGACACGCTG GCGAGCGAAC CGGCACCGGA GACATTGCCC
GCCAGCGAGG TGACGCGGCA TCTCGAAGGA TTGCCGCCGC GGCAGCGCGA CGTGCTGCAA
TCGATCGCCG TCGACAGCGC CTCGATCAAG GACACTGCAG CGAAACTGTC GATGAGCGAG
GGCGCGGTGC GGGTGGCGCT ACATCGCGGC CTGTCGGCGC TCGCCGCCAA ATTGAGAACG
GTGTGA
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| Protein sequence | MRGRDDEWTD LMRSANAGDS IAYRRLLESV TPVLRAGARR GLARAGQPVD QAEDIVQDIL
LAVHLKRQTW DPGAPFAPWL FAIARNKLID TLRRRGRRVF VDIDDFADTL ASEPAPETLP
ASEVTRHLEG LPPRQRDVLQ SIAVDSASIK DTAAKLSMSE GAVRVALHRG LSALAAKLRT
V
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