| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2006 |
|---|
| Symbol | dnaE2 |
|---|
| ID | 6409666 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 2171825 |
|---|
| End bp | 2175412 |
|---|
| Gene Length | 3588 bp |
|---|
| Protein Length | 1195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642711892 |
|---|
| Product | error-prone DNA polymerase |
|---|
| Protein accession | YP_001991004 |
|---|
| Protein GI | 192290399 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGC GCTACGCCGA GATCGGCGTC ACCACTAATT TCTCGTTCCT CGAAGGCGGC
TCGCATCCGC AGGATTATGT CCATGAAGCG AGCCGGCTCG GGCTCGACGC GATCGGCATC
GCCGACCGCA ACACACTGGC CGGCGTGGTC CGCGCCTTCA GTGAGTTCGA TAACGAGGAG
CTGATCCACA AGCCGAAGCT CCTGATCGGG ACGCGGCTGT GCTTCGCCGA CGGCACGCCG
GACCTGTTGG CCTATCCGAC CGATCGCGCC GCTTATGGCC GCCTCTGCCG CCTCCTCAGC
GCCGGCAAGC TGCGCGCCGG GAAGGGCGAA TGCCATCTGA CGTTCGCGGA TCTGGAGGCG
TTCATCCACG AGCGATCGCC CTCGATCCAC GAACTTGCGA CGGTGATCCA TCCGCCCTCG
GCCTCGATCA ACCAGCCTTC CGCTTCCATC CATCAGTTCC CCACGCCGTC ATGGCCGGGC
TTGACCCGGC CATCTACGCC GACAAGCAAG GTCGTGCTGG TGTCCGTGGA TGCCCGGGTC
AAGCCCGGGC ATGACGGTGG GAAGCGTGTG GCCGATAATT CTCAGATCCT GCTCGTGGTC
ATGCCGTCCT ATCTCTTCCA GACCAAGACC ATCGCAATCG CATTGGAGCG TCTCACTGCG
CTGAACGCCG ACGCCGTCTG GCTTGGCCTC ACCCCGTATT ATCGCGGCGA CGACAAGCGG
CGGCTGGCGC GGCTGCGGCG GATTGCGGCG GCGGCGCGGG TGCCGTGCAT CGCCACCAAC
GACGTGCTGT ATCACCACCC GCGGCGGCGG GCGCTGCAGG ATGTGCTGAC CTGCGTGCGC
GAAAAGACCT CCATCGACAA GGCCGGGCGC CGGCTCGAAG GCAATGCCGA GCGGCATCTG
AAGCCGGCCG CCGAGATGGC GCGGCTGTTC CGTGCCGATC CGGAGGCGAT CGCCGAAACG
TTACGGTTCG CGAACCGCAT CAGCTTCACG CTGGACGAAC TGAAATATCA CTATCCCGAT
GAGCCGGTGC CGCCCGGCAA GACCGCGCAG CAGCATCTCG AAGACCTCAC CCGCGAGGGC
ATCGCCGCCT ATTTCCCGAA CGGCATCAGC GACAAGCTCC AGGCCACCAT CGCCAAGGAG
CTGGCGATCA TCGAACGCCG CGGCTACGCG CATTATTTTC TCACCGTGCA CGACATCGTC
CGCTATGCGC GGTCGCAGGA CATCCTGTGC CAGGGTCGCG GTTCGGCGGC GAATTCGGCC
GTGTGCTACG TGCTCGGCAT CACCTGCGTC GATCCGACCG AGATCGACCT TTTGTTCGAG
CGCTTCGTCT CCGAGGAACG CGACGAGCCG CCGGACATCG ATGTCGATTT CGAGCATTCG
CGCCGCGAAG AGGTGATGCA GTACATCTAT CGGCGCTATG GCCGGCATCG CGCCGCGATC
GTCGCCACCG TGATCCATTA TCGGCCGCGC TCGGCGATCC GCGACGTCGG CAAGGCGCTG
GGCTTGTCCG AAGACGTCAC GGCGGCGCTC GCCGACACGG TGTGGGGAAG TTGGGGCAAG
GGCCTCAACG AGATGCAGGT GCGCCAGGCC GGGCTCGATC CGCACAACCC GATGATCGGC
CGCGCGGTCG AACTCGCCAC CGAGTTGATC GGCTTTCCGC GTCATCTGTC GCAGCATGTC
GGCGGCTATG TGCTGACGCA GGACCGGCTC GACAGCTACG TCCCGATCGG CAACGCCGCG
ATGGAAGATC GCACTTTCAT CGAGTGGGAC AAGGACGACA TCGACGCGGT CAAGATGATG
AAGGTCGACG TGCTGGCGCT CGGCATGCTG ACCTGTATCC GCAAGGGTTT TCATCTGATC
GCGCAGCACA AGGGCGTTCG CTTCCAGCTC TCCGACATCA AGTCGGAGGA CGACAACGCC
GTTTACAAAA TGCTCCAGCG CGGCGAATCG ATTGGCGTGT TTCAGGTCGA GAGCCGGGCG
CAGATGAACA TGCTGCCGAG GCTGAAGCCG CGCTGCTTCT ACGACCTCGT CATCGAAGTC
GCGATCGTGC GGCCGGGGCC GATCCAGGGC GACATGGTGC ATCCTTACTT GCGGCGGCGG
AACGGTCAGG AGCCGGTGGT GTATCCGTCA CCGTCGGGCG AAGCCGGCGA CAAGAACGAA
CTGCAGCAGA TCCTCGGCAA GACGCTGGGG GTGCCGCTGT TCCAGGAGCA GGCGATGCGG
ATCGCGATCG AGGCGGCGCA CTTCACGCCG GACGAGGCCA ATCAGCTCCG CCGCGCGATG
GCGACGTTCC GCAACGTCGG CACGATTGGC AAGTTCGAAG CCAAGATGAT CGGCAATCTG
GTGAAGCGCG GCTACGACGC CACCTTCGCC AAGAACTGCT TCGAGCAGAT CAAGGGGTTC
GGCTCCTACG GCTTTCCGGA AAGCCACGCC GCCAGCTTCG CTAAGCTGGT CTATGTCTCG
GCGTGGATGA AGTGCGAGCA CCCCGACGCG TTTTGCTGCG CGCTATTGAA TTCGCAGCCG
ATGGGGTTCT ATGCGCCGGC GCAGATCGTC GGCGATGCGC GAAGTAATGG TGTCGAGGTG
CGGCCGGTCG ATGTGTCGTT CAGCGAAGGC CAGTGCACGC TCGAGGAGCG ATGCGGCAGG
CATCACGCGG TGCGGCTCGG TTTCCGGATG ATCGACGGCT TTCGCTGGGC CGATCCGGAT
GAGGAGCGGG TGCAGTTGGA AGCTGGTGAA CCGCCGAGCG ACGACTGGGC GGCACGCATC
GTCACGGCGC GGGCGAGGGG AGCGTTTAGT TCGCTCGAAC AGTTCGCCCG CATCACCGCG
ATGTCGAAGC GGGCGCTGAT CCTGCTGGCC GATGCCGATG CCTTCCGCTC ACTCGGGCTC
GATCGCCGCG CCGCGCTGTG GGCGGTGCGG CGTCTGCCCG ACGACGTGCC GCTGCCGCTG
TTCGAAGCCG CGAGCGCGCG CGAGCAGCAG GACGAGCACG CCGCGCCGCT CCCCGCGATG
CCGATGGCCG AGCACGTCGT CGCCGACTAC CAGACCGTGC GGCTGTCGCT GAAGGGCCAC
CCGATGGAAT TCCTACGCGC GCTGTTCGCG GCCGAGCGGG TAGTAACATG CCGCGAATTG
TCGCGGTCCG AGCAGCGCGC CAGCGGCCGT TGGCTGCGCT GCGCCGGCGT CGTGCTGGTG
CGGCAACGGC CGGGCAGCGC CAATGGCGTG ATCTTCATGA CCATCGAGGA CGAGACCGGC
ATCGCCAACA TCGTGGTGTG GCCGGCCATC ATGGAGAAGT TTCGCAAAGA GGTGATGGGC
GCGCGGCTGG TGCTGGTCGA GGGCAAGGTC CAGGCGAGCC CGGAAGGCGT GGTGCATCTC
GTCGCCGAGC GGCTGATTGA TCGCAGCGCC GAGATGGGGC GCCTCGCCGA AGGCCTGGTC
CGCCCGGCGC TGCCGGACGG CGCCGATCTC TACGAGCCGC TGACCTCCGA GAAGTACAAC
TACGAAGCCC TCAACGGCGA TCGCCGCGAC ACGCCCGACG CCCCCGCCCA ACGCCATCGC
CACCCCCGGG ACGTCCGCAT CCTGCCGCCG TCAAGGGATT TCCACTAA
|
|---|
| Protein sequence | MSARYAEIGV TTNFSFLEGG SHPQDYVHEA SRLGLDAIGI ADRNTLAGVV RAFSEFDNEE
LIHKPKLLIG TRLCFADGTP DLLAYPTDRA AYGRLCRLLS AGKLRAGKGE CHLTFADLEA
FIHERSPSIH ELATVIHPPS ASINQPSASI HQFPTPSWPG LTRPSTPTSK VVLVSVDARV
KPGHDGGKRV ADNSQILLVV MPSYLFQTKT IAIALERLTA LNADAVWLGL TPYYRGDDKR
RLARLRRIAA AARVPCIATN DVLYHHPRRR ALQDVLTCVR EKTSIDKAGR RLEGNAERHL
KPAAEMARLF RADPEAIAET LRFANRISFT LDELKYHYPD EPVPPGKTAQ QHLEDLTREG
IAAYFPNGIS DKLQATIAKE LAIIERRGYA HYFLTVHDIV RYARSQDILC QGRGSAANSA
VCYVLGITCV DPTEIDLLFE RFVSEERDEP PDIDVDFEHS RREEVMQYIY RRYGRHRAAI
VATVIHYRPR SAIRDVGKAL GLSEDVTAAL ADTVWGSWGK GLNEMQVRQA GLDPHNPMIG
RAVELATELI GFPRHLSQHV GGYVLTQDRL DSYVPIGNAA MEDRTFIEWD KDDIDAVKMM
KVDVLALGML TCIRKGFHLI AQHKGVRFQL SDIKSEDDNA VYKMLQRGES IGVFQVESRA
QMNMLPRLKP RCFYDLVIEV AIVRPGPIQG DMVHPYLRRR NGQEPVVYPS PSGEAGDKNE
LQQILGKTLG VPLFQEQAMR IAIEAAHFTP DEANQLRRAM ATFRNVGTIG KFEAKMIGNL
VKRGYDATFA KNCFEQIKGF GSYGFPESHA ASFAKLVYVS AWMKCEHPDA FCCALLNSQP
MGFYAPAQIV GDARSNGVEV RPVDVSFSEG QCTLEERCGR HHAVRLGFRM IDGFRWADPD
EERVQLEAGE PPSDDWAARI VTARARGAFS SLEQFARITA MSKRALILLA DADAFRSLGL
DRRAALWAVR RLPDDVPLPL FEAASAREQQ DEHAAPLPAM PMAEHVVADY QTVRLSLKGH
PMEFLRALFA AERVVTCREL SRSEQRASGR WLRCAGVVLV RQRPGSANGV IFMTIEDETG
IANIVVWPAI MEKFRKEVMG ARLVLVEGKV QASPEGVVHL VAERLIDRSA EMGRLAEGLV
RPALPDGADL YEPLTSEKYN YEALNGDRRD TPDAPAQRHR HPRDVRILPP SRDFH
|
|---|
| |