| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2003 |
|---|
| Symbol | |
|---|
| ID | 6409663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 2167982 |
|---|
| End bp | 2169232 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642711889 |
|---|
| Product | Radical SAM domain protein |
|---|
| Protein accession | YP_001991001 |
|---|
| Protein GI | 192290396 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4277] Predicted DNA-binding protein with the Helix-hairpin-helix motif |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTGC AGCGCAAGCT GGCCATCCTG GCGGACGCGG CGAAATACGA CGCCTCCTGC
GCCTCCAGCG GCACGGAGAA ACGCGACAGC CAGGGCGGCA AGGGTCTCGG CTCCACTGCG
CCCGGCATGG GCATCTGTCA TTCATATGCG CCGGACGGGC GCTGCATCTC GCTGCTCAAG
GTGCTGCTCA CCAACGCCTG TGCTTATGAC TGCCTGTATT GCGTCAACCG GGCCTCTTCG
AACGTGCCGC GCGCCCGCTT CACCATCGAC GAGGTGGTGC AGCTCACGCT CGACTTCTAT
CGCCGCAACT ACATCGAGGG GCTGTTTCTA TCCTCGGGCA TCATCCGCAG CGCCGACTAC
ACCATGGAGC AGATCGTCGA AGTGGCGCGG CGCCTCCGGG AAGAGCATCA CTTCCGCGGC
TACATTCATC TGAAGACGAT CCCGGAAGCC GACGACGCGC TGATCGCCAA GGCCGGCCGC
TATGCGGACC GGCTCAGCAT CAATATCGAG ATGCCGGAGG AGACCAGCCT CGCTCAATTG
GCGCCGGAGA AGAACGTCCG CGCCATCCGC CGCACCATGG GGCGGCTGCG GCTGAAGCTG
GATGAAGCGA CCGAGGCCAA GGCCGAGGCG CGTAAAACCC CCACCCGCGC CAAGCCGCCG
CGCTTCGCAC CGGCCGGCCA GAGCACGCAG ATGATTGTCG GCGCCGACAG CGCCACCGAC
CAGACCATCC TCAATACATC CGCCAATCTC TACGGCTCGT ACAATCTGAA GCGGGTGTAC
TACTCGGCGT TCAGCCCGAT CCCGGATTCC AGCCGCGCGC TGCCGCTGCA GGCGCCGCCA
TTGGTGCGCG AACATCGGCT GTACCAGGCC GACTGGCTGA TACGGTTCTA CGGCTTCGAC
GCCGGCGAGA TCATCGATCC GGCCGCCGGC ATGCTGTCAC TGGAGATGGA TCCGAAGCTC
GCCTGGGCGC TGCGCCACCG CGAGCGCTTC CCGCTCGACG TCAACCGCGC CAGCCGCGAG
GAATTGCTGC GCATTCCCGG CTTCGGCCGC AAGGCGGTCG ACCGCATTAT CGATACGCGG
CGCTACAGCG CGATCCGCGC TGCGGACCTC GCCAAACTCC ACATCCCAAG GAACAAGGCG
CTGCCGTTCA TCGTTCTCCC CGACCACCGC CCGCCGACCT ATCTGCTCGA CGGAGCGCGG
CTGGCGGAGC GGTTTCAACC GAAAGCACAG CAACTGGGAT TTGGGTTTTG A
|
|---|
| Protein sequence | MDVQRKLAIL ADAAKYDASC ASSGTEKRDS QGGKGLGSTA PGMGICHSYA PDGRCISLLK
VLLTNACAYD CLYCVNRASS NVPRARFTID EVVQLTLDFY RRNYIEGLFL SSGIIRSADY
TMEQIVEVAR RLREEHHFRG YIHLKTIPEA DDALIAKAGR YADRLSINIE MPEETSLAQL
APEKNVRAIR RTMGRLRLKL DEATEAKAEA RKTPTRAKPP RFAPAGQSTQ MIVGADSATD
QTILNTSANL YGSYNLKRVY YSAFSPIPDS SRALPLQAPP LVREHRLYQA DWLIRFYGFD
AGEIIDPAAG MLSLEMDPKL AWALRHRERF PLDVNRASRE ELLRIPGFGR KAVDRIIDTR
RYSAIRAADL AKLHIPRNKA LPFIVLPDHR PPTYLLDGAR LAERFQPKAQ QLGFGF
|
|---|
| |