Gene Rpal_1994 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1994 
Symbol 
ID6409654 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp2155503 
End bp2157275 
Gene Length1773 bp 
Protein Length590 aa 
Translation table11 
GC content67% 
IMG OID642711880 
ProductABC transporter related 
Protein accessionYP_001990992 
Protein GI192290387 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0411] ABC-type branched-chain amino acid transport systems, ATPase component
[COG4177] ABC-type branched-chain amino acid transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGCGTT GGCTGCCAAT TCTCCTGTTC GCCGCCGTGA TGACGGCGCT GCCGCTGATT 
CCGGGCATTC CGCCGTTCTG GATCGTGCTG CTCGACAATA TCGGCCTCGC CGCGCTGGTG
GCGATGGGCC TGGTGCTGCT CACCGGCGTC GGCGGGCTCA CCTCGTTCGG CCAGGCCGCA
TTCTGCGGCT TCGGCGCCTA CACCACCGCC TACATCACCA CGGTTTATGG CCTGTCGCCA
TGGCTGGCGC TGCCGGCTTC GCTTGCAGTC GCCGGCATCG CCGCGGTGCT CCTCGGGCTG
ATGACAGTGC GGCTGTCCGG CCACTATCTG CCGCTCGGCA CTATCGCCTG GGGCATCGCG
CTGTACTACC TGTTCAGCAA GCTCGACTTC CTCGGCCGCA ACGACGGCAT CTCAAGGGTG
CCGCCGCTGT CGATCGGCCC GATCGACATG TACGATCCGC ATACGATCTA TTTCGTGATC
TGGGCGATGG TACTGATCAG CGCGGTGCTG ACGATGAACC TGCTCGACAG CCGCACCGGC
CGCGCCATCC GCGCGCTGCG CCGCGGCCAT GTCGCCGCCG AAGCCTTCGG CGTGCAGACC
GCGCGGGCCA AGCTGCTCGT CTTCATCTAC GCCGCGGTGC TCGCCGGCCT GTCCGGCTGG
CTGTACGCGC ATTTCCAACG CAACGTGAAC CCGACGCCGT TCGGTCCGCA GGCCGGCATC
GAGTATCTGT TCATCGCCGT GGTCGGCGGC GCCGGCTATG TCTGGGGCGG CGTGCTTGGC
GCCGCGATCG TCATCATCCT GAAGGAAGTG CTGCAGGGCT ATCTGCCGCT GCTGTTCGGC
GGCCAGGGCC AGCTCGAGAT CATCGTGTTC GGCATCCTCT TGGTGGTGCT GCTGCAGCTC
GCGCCCGGCG GCGTCTGGCC CTGGCTCGCC AATCTGGTGC CGCTGAAATT CCGGCGTGCC
GTCACCGGCA ATGCCGGTGG CCTGCCCGCG CGCGAGCGCG TCGGCGGCTC CACCACCGCC
CCGCTGCTGA AGGTCGAGCG CGCGCGAAAG CAGTTCGGCG GCGTGGTTGC AGTCAACGAC
GTGTCGTTCG AGGTCAACGC CGCGGAGATC GTCGCGCTGA TCGGCCCGAA CGGCGCCGGC
AAATCGACCA CCTTCAACCT GATCACCGGC ATCCTCACCA CTACCGGCGG ACGGATCGAA
GTGCACGGCA AGCCGGTCGA CAACACGCCG CCGCAGGAGG TGGTGAAGCT CGGCATCGCC
CGGACCTTCC AGCACGTCAA GCTGGTGCCG GACATGACCG TCCTGGAGAA TGTCGCGATC
GGCGCGCACT TGCGCGGCCG CTCCGGGGCG ATCACCAGTA TGCTGCGGTT CGATCGCGGC
GACGAGGCCA AGCTGCTCGC CGAAGCCGCG CGCCAAGTCG AGCGCGTCGG GCTCGGCGCC
GAGATCGATC AGCTCGCGGG GTCGCTCTCG CTCGGCCAGC AGCGCATCGT CGAAATCGCG
CGCGCGCTGT GTGCCGATCC CGAACTGCTT CTGCTCGACG AGCCGGCCGC CGGCCTGCGC
CACATGGAAA AGCAGCGGCT CGCTGCGCTG CTGCGGCAGC TCAAGGACAG CGGCATGTCG
GTTCTACTGG TCGAACACGA TATGGGCTTC GTGATGGACC TCGCCGACCG CATCGTCGTG
CTCGACTTCG GCACCAGGAT CGCCGAAGGC ACGCCCGACG CGATCAAGAC CAATCCAGAC
GTGATCAAAG CCTATCTCGG AGCGCTGGCA TGA
 
Protein sequence
MPRWLPILLF AAVMTALPLI PGIPPFWIVL LDNIGLAALV AMGLVLLTGV GGLTSFGQAA 
FCGFGAYTTA YITTVYGLSP WLALPASLAV AGIAAVLLGL MTVRLSGHYL PLGTIAWGIA
LYYLFSKLDF LGRNDGISRV PPLSIGPIDM YDPHTIYFVI WAMVLISAVL TMNLLDSRTG
RAIRALRRGH VAAEAFGVQT ARAKLLVFIY AAVLAGLSGW LYAHFQRNVN PTPFGPQAGI
EYLFIAVVGG AGYVWGGVLG AAIVIILKEV LQGYLPLLFG GQGQLEIIVF GILLVVLLQL
APGGVWPWLA NLVPLKFRRA VTGNAGGLPA RERVGGSTTA PLLKVERARK QFGGVVAVND
VSFEVNAAEI VALIGPNGAG KSTTFNLITG ILTTTGGRIE VHGKPVDNTP PQEVVKLGIA
RTFQHVKLVP DMTVLENVAI GAHLRGRSGA ITSMLRFDRG DEAKLLAEAA RQVERVGLGA
EIDQLAGSLS LGQQRIVEIA RALCADPELL LLDEPAAGLR HMEKQRLAAL LRQLKDSGMS
VLLVEHDMGF VMDLADRIVV LDFGTRIAEG TPDAIKTNPD VIKAYLGALA