| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1980 |
|---|
| Symbol | |
|---|
| ID | 6409640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 2140770 |
|---|
| End bp | 2142119 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642711866 |
|---|
| Product | amidase |
|---|
| Protein accession | YP_001990978 |
|---|
| Protein GI | 192290373 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0409762 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGAC ATCCCACACT CGCCGCTCTG GCGGCCGATC TCGAAGCCGG CCGCACCACC
GCCCGCAAGC TGGTGGAAGA CTGTCTGGCG CGGATCGCCG ATCCGGCCGG CGAGGGCGCG
CGCGCCTTCA TCCACGTCGA TCGCGACGCG GCACTGCAGG CGGCGGACGC GATGGACAAG
CTGCGCGCCT CCAAGGCGGC GCCGTCGCCG TTCGCCGGCA TTCCGATCTC GATCAAGGAT
CTGTTCGACA TCAAGGGCCA GGTGACCCGC GCCGGCTCGC GCGCGCTCGA CGACAATCCG
CCCGCCGACA GCGATGCGCC CGCGGTGGCA CGGCTGCGGC GCGCCGGGTT CGTGGTGATC
GGCCGCACCA ACATGACCGA GTTCGCCTAT TCGGGCATCG GCATCAACCC GCATTACGGC
ACGCCGAAAG CCGCCTATCG CCGAGACGTC GGCTACGTGC CGGGCGGCTC GTCGTCAGGC
GCCGCGGTCT CGGTCGCCGA CGGCATGGCG CATGCCGGGC TCGGCACCGA CACTGGCGGC
TCGTGCCGGA TTCCTGCGGC GTTCAACGGC ATCGTCGGCT ACAAGCCGTC GCAATATCGC
GTGCCGCGCG ACGGCGCGGT GCCGCTTTCG TTTTCGCTCG ACAGCATCGG CCCGCTGGCG
CGCGGCGTTG AATGCTGCGC CACGCTCGAT GCGATTCTCG CCGACCAGCC GGTGGGACCG
CTGATCGTGC GCCCGCTGAA GGGCATGCGG ATCGCAGTGC CGACCACGGT TGCGCTCGAC
GATCTCGATG CCGCCGTCAC GGCCGCGTTC GAACGCGCGC TGAAGACGCT GGCGAGCCAC
GGCGCGATCA TCGAGAAGAT CGAAGTGCCG GAGTTCGCCG AGGTTGGTCC GCTGGGCGCC
AAGGGCGGTT TTGCCGCTGC CGAGAGCTAC GCCTGGCACC GCTACCTGAT CGTGGCGCAG
GGCGACGTCT ACGATCCGCG GGTGCGCGAG CGCATCCTGC GCGGCGAGAC CCAGAGCGCC
GCCGACTACG TCGATCTGGT GAATGCGCGC AAATCGCTGA TCGCGCGTGC CTCGGCGCGG
CTCGCGCCCT ACGATGCAGT GGCGATGCCG ACCACTGCGA TCGCGGCGCC GACCATTGCG
GAGCTGGCCG ACGACAAGGC GTTCACCAAG GCCAATCTGC TGACGCTGCG GAATTGCACC
CTGATCAACA TGATCGACGG CTGCGCGATC TCGCTGCCGT GCCACCAGGA CGGTGAGCCG
CCGATCGGGC TGATGCTGGC GGGTGTCAAC GGCACCGACC GCGAAATCTT CGAAGTTGCG
GCCGGCATGG AGGCGGTGAT CCGTGGTTGA
|
|---|
| Protein sequence | MTRHPTLAAL AADLEAGRTT ARKLVEDCLA RIADPAGEGA RAFIHVDRDA ALQAADAMDK
LRASKAAPSP FAGIPISIKD LFDIKGQVTR AGSRALDDNP PADSDAPAVA RLRRAGFVVI
GRTNMTEFAY SGIGINPHYG TPKAAYRRDV GYVPGGSSSG AAVSVADGMA HAGLGTDTGG
SCRIPAAFNG IVGYKPSQYR VPRDGAVPLS FSLDSIGPLA RGVECCATLD AILADQPVGP
LIVRPLKGMR IAVPTTVALD DLDAAVTAAF ERALKTLASH GAIIEKIEVP EFAEVGPLGA
KGGFAAAESY AWHRYLIVAQ GDVYDPRVRE RILRGETQSA ADYVDLVNAR KSLIARASAR
LAPYDAVAMP TTAIAAPTIA ELADDKAFTK ANLLTLRNCT LINMIDGCAI SLPCHQDGEP
PIGLMLAGVN GTDREIFEVA AGMEAVIRG
|
|---|
| |