Gene Rpal_1970 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1970 
Symbol 
ID6409630 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp2128828 
End bp2129892 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content68% 
IMG OID642711856 
Producthypothetical protein 
Protein accessionYP_001990968 
Protein GI192290363 
COG category[S] Function unknown 
COG ID[COG2855] Predicted membrane protein 
TIGRFAM ID[TIGR00698] conserved hypothetical integral membrane protein 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCTGA TCACAAATGC CAAACTCTAC CCGCCCCGCC ACCCACGCGC CGCCCATCTC 
GCGCACCACC TTGCGGCCAT CGCACCCGGG GTGCTGGTGA CCGCCGCGAT CGCAGCCGCC
GCGGTCGGCC TGCGCGCCAT TCCGGGCATG CCCGGGATCA GCCCTATGCT GCTGGCGATC
CTGATCGGCA TCGTCGCCCA CAATGCGATC GGCACGCCGT CCTGGGCGGT ACCGGGCGTC
AAGTTCAGCC TCCGGCGAGT GCTGCGCTTC GCCATCATCC TGCTCGGCCT GCAGCTCACC
ACCGCGCAAC TGATCGAGGT CGGCGGCGAA GGGCTGGCGA TCATCGCCGC GACGCTGCTC
GCCACCTTCT GCTTCACGGT GTGGTTCGGG CGCGTGCTCG GCGTCGACCG CAAGCTCGCC
GAGCTGATCG CCGCCGGCAC CTCGATCTGC GGCGCGTCCG CGATCATCGC CACCAACACC
GTGACCCGCG CCGACGACGA AGACGTTGCC TATGGCGTGG CCTGCGTCAC CGTGTTCGGT
TCACTGGCGA TGGTCAGCTA TCCGCTGTTG CAGAACGTAC TCAATCTCGA CGCCCACGGT
TTCGGGCTGT GGACCGGCGC CTCGATCCAC GAGATCGCGC AGGCCGTGGC GGTGAGCTTC
CAGGGCGGAC AGCGCGCCGG CGAATTCGGC ACGATCGCCA AGCTGTCCCG GGTGATGATG
CTGGCGCCGC TGGTGATTGG GCTCGGCATG CTGGCACGCG TCCGCGCCAA GCATCAGCCT
GCCGGCGACC ACACTGCGAC ACCGCCGATG CCGTGGTTCG TGCTGGGCTT CGTGGCGATG
ATCGGCGTCA ATGAGTTCGT CGCGATCCCG CACGAGGCCG AGAGCTGGAT CGTAACGATC
ACCGCCTTCC TGCTCTCAAT GGCGCTGGCG GCGATGGGAC TGGAGACCGA CCTGCGCAAA
CTTGCCGCGC GCGGCCTGCG CCCCGCTTTG CTCGGCCTCA CCGCGTCGCT GTTCATTGCC
GGCTTCTCGC TGGCGCTGAT CAAACTCACA GGATGGCATG GATGA
 
Protein sequence
MSLITNAKLY PPRHPRAAHL AHHLAAIAPG VLVTAAIAAA AVGLRAIPGM PGISPMLLAI 
LIGIVAHNAI GTPSWAVPGV KFSLRRVLRF AIILLGLQLT TAQLIEVGGE GLAIIAATLL
ATFCFTVWFG RVLGVDRKLA ELIAAGTSIC GASAIIATNT VTRADDEDVA YGVACVTVFG
SLAMVSYPLL QNVLNLDAHG FGLWTGASIH EIAQAVAVSF QGGQRAGEFG TIAKLSRVMM
LAPLVIGLGM LARVRAKHQP AGDHTATPPM PWFVLGFVAM IGVNEFVAIP HEAESWIVTI
TAFLLSMALA AMGLETDLRK LAARGLRPAL LGLTASLFIA GFSLALIKLT GWHG