| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1957 |
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| Symbol | |
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| ID | 6409617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2113429 |
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| End bp | 2114208 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642711843 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001990955 |
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| Protein GI | 192290350 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.491739 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCATTT TCGATTTGAG CGGCCGCGTC GCGGTCGTCA CCGGGGGCAA CGGTGGTATC
GGCCTCGGTA TGGCACAGGC TCTGGCTGCT GCGGGCTGTA ACGTGTCGAT CTGGGGTCGC
AACGCGGTCA AGAATCACGC CGCGCTCGCT ACCATGGCAA ATGCTCCCGG CAAGGTCGAA
GCTCAGATCT GCGACGTCAC CGATCCGGCT TCGGTGAAGG CCGCGATGGA CGCGACGCTG
AAGGCATTCG GCCGGGTCGA CGGCTGCTTC GCCAATGCGG GCATCGGCGG CGGCGGCCGG
CAGGCTTTCA TCGACCGTAC CGAAGAGCAA TGGCGCTCGA TGTTCGCCAC CAATCTCGAC
GGCGTGTTCC ACGCCTTCCA GGCCGCGGCC CGGCACATGA CCGAGCGCGC CGCCGACGGC
GATCCGTTCG GCCGGCTGGT CGCGACCTCG AGCCTCGCTT CGATCTTCGG CACCGCGCGC
AACGAGCACT ACGCGGCCAC CAAGGCGGCG ATCAATGCAC TGGTCCGCGC GCTAGCCGTC
GAACTCGCCC GCTATGGCGT CACCGCCAAT GCGATCCTGC CGGGCTGGAT CAAGAGCGAC
ATGACCGCCG GCATCATGGG CAACGACAAA TTCGTCGCCA ACGTGATGCC GCGTATTCCT
GTGCGGCGGT TCGGCGAGCC GGAAGATTTC GGCGGCATCG CGGTGTACCT GATGAGCAAG
GCGTCGTCGT ATCACACCGC CGATACTTTC GTGATCGACG GCGGCTACAC CGCGTTCTGA
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| Protein sequence | MSIFDLSGRV AVVTGGNGGI GLGMAQALAA AGCNVSIWGR NAVKNHAALA TMANAPGKVE
AQICDVTDPA SVKAAMDATL KAFGRVDGCF ANAGIGGGGR QAFIDRTEEQ WRSMFATNLD
GVFHAFQAAA RHMTERAADG DPFGRLVATS SLASIFGTAR NEHYAATKAA INALVRALAV
ELARYGVTAN AILPGWIKSD MTAGIMGNDK FVANVMPRIP VRRFGEPEDF GGIAVYLMSK
ASSYHTADTF VIDGGYTAF
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