| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1955 |
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| Symbol | |
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| ID | 6409615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2110505 |
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| End bp | 2111707 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642711841 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_001990953 |
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| Protein GI | 192290348 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.159137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCACTG ATCAACCGCC GCGTAGATCC CGTCGCGGTC TCGGCATCGC CGGCGTGGTG
CTCGCCTGCG GTGCGGTCGC GATTGTCGTC ACCGGGATCA GCGCCCGTCA GAAGAGCAGT
GCCGAACTGC GAACTTGGAC CGACGAGCAG GCGATCTCCA GCGTCGCGGT GACGCGGCCC
GACGGCAAGG CGCCGACCGC TACGCTCGAT CTGCCGGGAC GGCTCGAGGC CTATTCGCGC
GCGCCGATCT ACGCCCGCGT CTCCGGCTAC GTGAAGAGCT GGAGCGCCGA CATCGGCGCC
AAGGTGAAAG CCGGTGAGGT GATCGCCGAG ATCGAGGCGC CGGATCTCGA TCAGCAATTG
CTGCAGGCCC GTGCCGATCT CGCCAGTCAG CAAGCGAGTG CGAAGCTGTC GGAAGCGACA
CTGAACCGGC GCAAGACGCT GGTGGCGTCG AACTTTGTCT CGGCGCAGGA AATCGACGAA
CGCACCGCCG ACCTCGCAGC CAAGAAGGCG GCGGTCAATT CCGGCCAGGC CAATGTCGAG
CGGCTCGAAG CGCTCGCCGG CTACAAGAAG ATCACCGCAC CGTTCGACGG AATCGTCACC
GAGCGTAACA CCGACGTTGG CGCGCTGATC AACGCCGGTT CGAGCTCAGG GCCCGCGATG
TTCGTGGTGT CGGACATCGC CAAGCTGCGC GTCTACGTTA ATGTGCCGCA GAACTACGCG
CCGCTGGTGC GGATCGGCGG CAAGGCGGTG ATCGCGCTGC CCGAATATCC GGGGCGCACC
TTCCCGGCGA CGGTTGAAGC GTCCTCACAG GCGGTGGACG TCGCCTCCGG CACGATGCGG
ATTCAACTCG GGCTCGACAA CGCCAAGGGC GAACTGATGC CGGGCGGCTT CGCTAATGTG
AAGCTCGCGC TGGTCCGCGA TTCTGCGCCG CTGCACATTC CAGCATCGGC GCTGATCTTC
AACCGCAGCG GGCTGCGTGT CGCGACGGTC GGCCCGGATG ATCGTGTCCA GCTCAAGCCC
GTGACCATCG CCCGCGACCT CGGGCGCGAG ATCGAGCTGT CCGCCGGTCT CACCGCCGAC
GACCGCATCA TCATCGCGCC GCCGGACGGC ATCGCCAACG GCGAGAAGGT GCGCGTGGTC
GCCGACGATG CTGCGAAGGC CGCGAAGCCG ACGGCCTCGG AGAAGCAGGA CGTGAAGGGG
TAA
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| Protein sequence | MPTDQPPRRS RRGLGIAGVV LACGAVAIVV TGISARQKSS AELRTWTDEQ AISSVAVTRP
DGKAPTATLD LPGRLEAYSR APIYARVSGY VKSWSADIGA KVKAGEVIAE IEAPDLDQQL
LQARADLASQ QASAKLSEAT LNRRKTLVAS NFVSAQEIDE RTADLAAKKA AVNSGQANVE
RLEALAGYKK ITAPFDGIVT ERNTDVGALI NAGSSSGPAM FVVSDIAKLR VYVNVPQNYA
PLVRIGGKAV IALPEYPGRT FPATVEASSQ AVDVASGTMR IQLGLDNAKG ELMPGGFANV
KLALVRDSAP LHIPASALIF NRSGLRVATV GPDDRVQLKP VTIARDLGRE IELSAGLTAD
DRIIIAPPDG IANGEKVRVV ADDAAKAAKP TASEKQDVKG
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