Gene Rpal_1952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1952 
Symbol 
ID6409612 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp2105431 
End bp2106135 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content65% 
IMG OID642711838 
ProductABC transporter related 
Protein accessionYP_001990950 
Protein GI192290345 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.571715 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGTCGG TGCGTGAGGT CACCACCGCC TATAAGGGCC TGGTCGCGAT TTCGAACGTC 
TCGATCGAGG TCGAGCAGGG CGAGATCGTC TGCGTCGCCG GCGCCAATGG CGCGGGCAAA
TCGACGTTGC TGAAATCGAT TGCCGGTGCC GAGCGCATTC GTTCCGGCCA GGTGCTGTTC
GACGGCGAGC GGCTCGACGG CGTCCCGCAG CATGTGATCA CCAAGCGCGG CGTCGCCTAT
GTGCCGGAGA ACCGCCGGCT GTTTCCCCGG CTGTCGGTCC ATGACAATCT GCGGCTCGGC
AGTTACCTCT ATCGCGGCGA AGCCGATCGC GAGAAGCCGC TGGAGTTCGT GTTCAGCCTG
TTTCCCCGGT TGCAGGAACG GCTGGAGCAG CGTGCCGAGA CTTTGAGCGG TGGCGAGCAG
CAGATGCTGG CGATCGGCCG CGCGCTGATG ACTCGGCCGC GCCTGCTGAT GCTCGACGAG
CCGTCGCAGG GCATCATGCC TAAGCTGGTC AGCGAGATCT TCCAGTCGGT GAAGAAGATC
CGCGACGCCG GCATGACCGT GCTGATCGTC GAGCAGCGCA TGGCCGAATG CCTCGAAATC
GCCGACCGCG CCTACATCCT GCAGACCGGC CGCGTGCTGA TGCAGGGCAA GGCCGCCGAG
CTGATGGATA ACCCCGACGT CCGGAAGGCG TATCTGGGGC TCTAG
 
Protein sequence
MLSVREVTTA YKGLVAISNV SIEVEQGEIV CVAGANGAGK STLLKSIAGA ERIRSGQVLF 
DGERLDGVPQ HVITKRGVAY VPENRRLFPR LSVHDNLRLG SYLYRGEADR EKPLEFVFSL
FPRLQERLEQ RAETLSGGEQ QMLAIGRALM TRPRLLMLDE PSQGIMPKLV SEIFQSVKKI
RDAGMTVLIV EQRMAECLEI ADRAYILQTG RVLMQGKAAE LMDNPDVRKA YLGL