Gene Rpal_1922 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1922 
Symbol 
ID6409582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp2070966 
End bp2071616 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content68% 
IMG OID642711808 
Product2OG-Fe(II) oxygenase 
Protein accessionYP_001990920 
Protein GI192290315 
COG category[L] Replication, recombination and repair 
COG ID[COG3145] Alkylated DNA repair protein 
TIGRFAM ID[TIGR00568] DNA alkylation damage repair protein AlkB 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.121028 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACGGCGG ATCTGTTCGA CGGTCTCGAC GATGCGCCGC GGCGGGAAGA CATCGCGCCG 
GGCGCTGCGC TGCTCAGCGG TTTTGCCCGC GCAAACGAGC GCGAACTGCT CGCCGCGATC 
GACGCGGTGG TGGCGCGTGC GCCGTTCCGC CACATGATGA CCCCCGGCGG TCACACGATG 
AGCGTGGCGA TGACGAGCTG CGGCTCGGTC GGCTGGGTCA CCGACCGACG TGGTTATCGC 
TACTCGCCGA ACGATCCGGA CAGCGTGACG CCGTGGCCAA AGATGCCTGC GGTGCTCCGC 
GATCTTGCGC AGCGCGCCGC CGCTGACGTC GGCTTTGCCG GCTTCGATCC CGACGCCTGC 
CTGATCAATC GCTACGTGCC AGGCGCCAAG ATGGCGCTGC ATCAGGACAA GGATGAAGCC 
GACTTCTTGG CGCCGATCGT GTCGGTGTCG CTCGGCCTGC CGGCGACCTT TCAATTCGGC 
GGCATGGCCC GCAGCGACAA GCCGCGACGC TATGAGCTGC GTCACGGCGA TGTGCTGGTG 
TGGGGCGGCC CGTCGCGGCT GGTGTATCAC GGCGTGCTGA CGCTGAAGGA CGGCGAGCAT 
CCGCTGCTCG GCCGGCAGCG GATCAACCTC ACCTTCCGCA AGGCGCTGTA G
 
Protein sequence
MTADLFDGLD DAPRREDIAP GAALLSGFAR ANERELLAAI DAVVARAPFR HMMTPGGHTM 
SVAMTSCGSV GWVTDRRGYR YSPNDPDSVT PWPKMPAVLR DLAQRAAADV GFAGFDPDAC 
LINRYVPGAK MALHQDKDEA DFLAPIVSVS LGLPATFQFG GMARSDKPRR YELRHGDVLV 
WGGPSRLVYH GVLTLKDGEH PLLGRQRINL TFRKAL