| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1916 |
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| Symbol | |
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| ID | 6409576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2065472 |
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| End bp | 2067682 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642711802 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001990914 |
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| Protein GI | 192290309 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCGCC ATTTGGAATC GCAGCTCGAC TTCATCTTCT TCTTCTATGG GCTGTCGTTC
ATCCTGCTCG GCGCACTGTG TCTCGTGCTC GCCCGGGGGC AAGACGACGA GCGTGGAGTC
ACGATCCGCT GGATCGGACT GTTCGGCTGC GTCCACGGCG CCAACGAATG GCTCGACATG
CTCGCGCTGA TCGCGGGCGA TGGCACCGAG TTCATGGTGG TCCGGACGGT GGTCTTGATC
ATGTCCTTCA TGCTGTTGGC CGAGGCGGGA CGGAAGGGGG GGGAGACGCA CGGCCTGCCG
ATGCCCGGGC CGTGGATTTA TATCCCTATC CTCATAGGCA TCGGCGCGAT CGGCTTTGTC
GACGGGTTGG CCTCGGCGAA GGCGGCGGCG CGCTATCTGC TTGCCGCGCC CGGCGCGGTG
CTCGTTGCCT TCACGGCGTT CACGGGCCGA AACGACGACA TTCGCATCAA TCGGCCGCTG
ATGGTCGGTG TGACGATCGC CTTCGCCGGT TATGCCGTGG CGGCCGGCAT GATCGTCGAG
TTCGCACCGT TCTGGCCGGC CAACAGCTTC AATCAGGAGA CGTTTCTACG CGTCACCGGC
GTGCCGATTC AGCTCGTTCG TGGGCTGATC GCGGTAGCGC TTGCGGCGCT GGTCTGGGCG
GCCTGGGGCC GCCGGGTGAT GGAGAAGCTG GATTATCCCG GCTATTCGCT GCACTTGAAA
CGCCAGTTTA TCGGTGTGCT CACGACCCTG CTGCTGGTCT TGGCGCTTGG CTGGGCGCTG
ACGAACTATC TCGGCGAGAT CTATCGCGAG GGTGTCGAGG GCGAAGCGAC GGGCGACGTT
ACTCTGCTGG TCAGCGGCCT CGAACGCGAA ACCGCGATCG CTGACGCAAT GGTGAAGGCG
CTCGCCGCGT CGCCATCGGT CCAACCGATG TTGGCTGGGC GGGAAGGCAA CCGTGTAGCC
GAGCTGTCGC TGCTCGAACT CGATGCCGGA GTCATACAGG TGACCCGTGG CCTGATCGTC
AATCGTGCCG GGGATATCGT CGGATCGTCA GATTCGTCGG ATCAGAGCTG GCTGGGCATG
CCGAACCTAC GCTCGGTCGA TTGGTTCAAA CAGTCGATCG CCGGCCGGGC CGTGCACCAG
ATCCGGGTCG ATCCGCCACA GCGCCTGCGA ACTTATCTGA CCGCTTCCCC GATCCGCGAT
GCCGATGGAG AAATTCAAGG CGTCGCGATG CTGGAGACGT CGCTGGAAAC ACTTGCGGAG
CTGATGACCC GCTTCGACCA GGCATTTTTT GTCGTCGATG CACGTGGGCT GGTCGTCATT
ACCAACCGCC GCGACGAACT GTTCCGAACG CTGTGGCCGC GGCCGGATCT GCCGCGTCTT
CAGATCGCCG AACAGTTCGG AGCGTCGGGA CGCCCGATGC TGGCTCGCGA AATCTTTGGC
GGCGACTGGG TCGAGTTCGG CGGGCGACGC AGCTACGTGC TGCGGCAGCC GATCGACGGC
ACCCAGATGT CGCTGATTCT CGCCATTCCG GTGAAGGGGA TCTTCGCCAG CCGACTGCTC
GGCATCATCA TCACGCTCCA GGTCGCGATC GCGGCGCTGT TCTATTTCTT CGGCATGGAC
CGCGGGGTGC GGGACCGTTT CGAGCGCCAG CTTCGCGAGG AACTGCTGAT CCAGACTGAA
GATCTCGCCC GCCAGGCGGC CACGGACTCG CTGACCGGCT TGGCGAACCG GATGAAGTTC
GATGCCCGTT TGAACGAGGA GTTGTCGCGG TCGCTGCGTA GCGGAAGGCC GTTCTCGCTG
ATCATCTTCG ACATCGATCA CTTCAAGGAA GTCAACGATA TCTACGGTCA TCCGGTTGGC
GACCAAGTGT TGGTCCGGCT GTCGCGGACC GTCGACGCGA GCGTTCGGCA GGCAGATCTG
TTGGCGCGCT GGGGTGGCGA AGAATTCGCA ATCCTGCTGC CCGACACCGA CGCGGCGGCG
GCCTATGAAA CCGCCAAGAA GCTACGCCTG CTGGTCGCGC ATACCATCTT CGAGCATGTC
GGCACGATCA CCGCGAGCTT CGGCGTTGCC CAGGTTCTGC CCGGTGATCA TGCCGACACG
TTGGTGGCAC GCGCCGACAA TGCGCTGTAC CGGGCCAAGC TGAACGGCCG CAACCGGGTC
GAGCTCAGCC TGCCGGTGAT CGAAGTCGTG GAGCTTTCAC CCACCGCGTG A
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| Protein sequence | MARHLESQLD FIFFFYGLSF ILLGALCLVL ARGQDDERGV TIRWIGLFGC VHGANEWLDM
LALIAGDGTE FMVVRTVVLI MSFMLLAEAG RKGGETHGLP MPGPWIYIPI LIGIGAIGFV
DGLASAKAAA RYLLAAPGAV LVAFTAFTGR NDDIRINRPL MVGVTIAFAG YAVAAGMIVE
FAPFWPANSF NQETFLRVTG VPIQLVRGLI AVALAALVWA AWGRRVMEKL DYPGYSLHLK
RQFIGVLTTL LLVLALGWAL TNYLGEIYRE GVEGEATGDV TLLVSGLERE TAIADAMVKA
LAASPSVQPM LAGREGNRVA ELSLLELDAG VIQVTRGLIV NRAGDIVGSS DSSDQSWLGM
PNLRSVDWFK QSIAGRAVHQ IRVDPPQRLR TYLTASPIRD ADGEIQGVAM LETSLETLAE
LMTRFDQAFF VVDARGLVVI TNRRDELFRT LWPRPDLPRL QIAEQFGASG RPMLAREIFG
GDWVEFGGRR SYVLRQPIDG TQMSLILAIP VKGIFASRLL GIIITLQVAI AALFYFFGMD
RGVRDRFERQ LREELLIQTE DLARQAATDS LTGLANRMKF DARLNEELSR SLRSGRPFSL
IIFDIDHFKE VNDIYGHPVG DQVLVRLSRT VDASVRQADL LARWGGEEFA ILLPDTDAAA
AYETAKKLRL LVAHTIFEHV GTITASFGVA QVLPGDHADT LVARADNALY RAKLNGRNRV
ELSLPVIEVV ELSPTA
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