| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1905 |
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| Symbol | |
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| ID | 6409565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2053063 |
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| End bp | 2053821 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642711791 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001990903 |
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| Protein GI | 192290298 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.139382 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGTTGA AAGACGTCTC CGTTCTCATC ACCGGCGGTG GTTCGGGGCT CGGCGCCGCG
ACCGCGCGGG CGATGGCCGC CAAGGGCGCC AAGGTTGCCG TGCTCGACAT GAACAAGGAC
AATGCCGAGA AGGTCGCCGC CGAGATCGGT GGCGTTGCCT GCGTCGGCGA CGTGTCGCAG
GAAGCCCCGG TCAAGGAGGC GATCGCCAAG GCTGAAGCCG CGCACGGCAT CGTCCGCGTG
CTGGTGAACT GCGCCGGCAT CGGCGGTGCG GTGAAGACCG TCAGCAAGAA CGGCGCCTAT
CCGCTCGATC ACTTCTCGCG CATCATCAAC GTCAACCTGA TCGGCAGCTT CAACTGCATC
CGGCTCGTCG CCGAGCGCAT GCAGAGCGCG CCGACCATCG GCGAAGAGCG CGGCGTCTGT
ATCAACACCG CGTCGGTGGC GGCGTTCGAC GGTCAGATCG GCCAGGCCGC TTACTCGGCC
TCGAAGGGTG GCATCGTCGG CATGACCCTG CCGGTGGCGC GCGACCTCGC CTCGATGAAC
ATCCGCGTCA TGACGATTGC GCCGGGCCTG TTCCTGACCC CACTGCTGAT GGGTCTGTCG
GAAGACGCCC GCAAGAGCCT CGGCTCCCAG GTGCCGCATC CGGCCCGCCT CGGCGATCCG
TCGGAATACG CTTCGCTCGC GGTGCAGATC GTCGAGAACC CGATGCTGAA CGGCGAGACC
ATTCGTCTCG ACGGCGCCAT CCGCATGGCG CCGCGCTAA
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| Protein sequence | MQLKDVSVLI TGGGSGLGAA TARAMAAKGA KVAVLDMNKD NAEKVAAEIG GVACVGDVSQ
EAPVKEAIAK AEAAHGIVRV LVNCAGIGGA VKTVSKNGAY PLDHFSRIIN VNLIGSFNCI
RLVAERMQSA PTIGEERGVC INTASVAAFD GQIGQAAYSA SKGGIVGMTL PVARDLASMN
IRVMTIAPGL FLTPLLMGLS EDARKSLGSQ VPHPARLGDP SEYASLAVQI VENPMLNGET
IRLDGAIRMA PR
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