Gene Rpal_1904 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1904 
Symbol 
ID6409564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp2051929 
End bp2052606 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content59% 
IMG OID642711790 
Producttranscriptional regulator, TetR family 
Protein accessionYP_001990902 
Protein GI192290297 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.550528 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGCGC ATCTCAACCA TTCTGCGGCT ACTAAAGTAC CGGCGGCGAA AAACTCCACC 
GCCGAGAAGC TGTTGGTTGC CGCGGGCGAA TTGATGATCG AGCGTAATTC GGTCGAGATC 
TCGCTGGCCG ACATCGCTCA GAAATCCGGC GTCAACGCCG CGCTGGTGAA GTACCACTTC 
GGTAACAAGG ACGGTCTGCT TCTGGCGCTG CTCGAGCGCG ATGCGTCGAA CGAAATGACA 
CATCTCGATT TCCTGCTGAC GCAGCCGCTG TCGCCGACCA CCAAGATGAA GCTGCACATC 
GCCGGCATCA TCAAGGCGTA TCACCAGTTT CCGTATCTGA ACCGGCTGAT CCACTACTTG 
CTGCACGGTT CAAATCGCGA AGCCGCCGAC GAGGTCACCA AGTTCTTCGT CGGGCCACTG 
CTCGACTTTC ATCGCCGGCT GCTTGCGGAG GGTGTCGCCA CCGGCGACTT TCGCGAAGTC 
GATCCGGTGC TGTTCTACAC CACGCTGATC GGTGCTTGCG ATCATCTGTT CTTCGGTCGG 
CAGACCATGA TGCGTGCCGC CGGCGTCGGT CCGGTGACCG AAGAGGTCTG CCGTGCCTAT 
GTGGTGCATA TCGAAAAGAT CGTCCTCGGT GGGTTGCTGA CGAATAGAGC GCGTCAGCCT 
TCCGTCGCCG GATCCTGA
 
Protein sequence
MAAHLNHSAA TKVPAAKNST AEKLLVAAGE LMIERNSVEI SLADIAQKSG VNAALVKYHF 
GNKDGLLLAL LERDASNEMT HLDFLLTQPL SPTTKMKLHI AGIIKAYHQF PYLNRLIHYL 
LHGSNREAAD EVTKFFVGPL LDFHRRLLAE GVATGDFREV DPVLFYTTLI GACDHLFFGR 
QTMMRAAGVG PVTEEVCRAY VVHIEKIVLG GLLTNRARQP SVAGS