| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1888 |
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| Symbol | |
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| ID | 6409548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2035520 |
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| End bp | 2036893 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642711777 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001990889 |
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| Protein GI | 192290284 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCG AGGCACCCGC CGACACGCCG CTGCCCGCTC CGCCGCCGAA CCGGCTGCTG
ACCGCCCCGA TCCTGCCGAC GCTGGTGCGG CTGGCGATCC CCAACACCAT CGCGATGCTC
GGCACTGCTT TGGTGGCGGT GGCCGAGACG TCGTATATCG GCCGGCTCGG CACCGAGCCG
TTGGCGGCGA TCGCTCTGGT GTTTCCGTTC GCGATGCTGA CGCAGATGAT GTCGGCCGGC
GCCATGGGCG GGGGCGTATC ATCGGCAATC AGCCGCGCCC TCGGCGCCGG TGATACACAC
CGGGCGGGCG TTCTGGCGCT CCATGCGATT CTGATCGGGA TCGGCGGCGG GCTGCTGTTC
ACGCTGGTGA TGCTGGTGTT CGGCCGGTCC CTGTTTGCTC TGTTGGGCGG GCGCGGCGAC
GTGCTGGAGC AGGCCTGCAG CTACTCGGTC GTCCTGTTCT CGGGTGCCGT GTCGATCTGG
CTGGTGAACA CCCTCGCCTC GATCTTGCGC GGCACTGGCG ACATGATCCT GCCGGCCGGC
GCCCTGCTCG GTGTCGCGGC TTTGCAGGTG GTGATCGGCG GCGCGCTCGG ACTCGGCCTG
TTCGGAATGC CGCGGCTCGG CATGCCTGGC GTCGCCTCCG GTCAAGCGAT CGCCTTCACC
ATCGGCGCGC TGTTCCTGCT GATCTATCTC GGCAGCGGCC GCAGCCGGCT GCGGCTGCAA
CTGCGGTCGT TTCGTCTGCA GCGTCCGATC TTCATCGACA TCCTCAAGGT CGGTGCGCTC
GCCTGTCTTG CTCCGCTGCA GTCGGTGCTG ACGATCCTGA TCTTCACCAA GGTGCTGGCA
AGCTACGGCA CTACCACGCT CGCCGGCTAC GGCATCGGCT CACGCTTGGA ATTCCTGTTG
ATCCCGATCG CGTTCGCAGT CGGTGTCGCC TCGATCCCGA TGGTCGGGAT GGCGATCGGC
GCCGGTGATA TCGCCCGGGC GCGGCGGGTC GCATGGACGG CCGGCGTAGT ATCCGCGGTG
ATCGTCGGAC TGGTCGGCGC CGTGCTGGCG ATCTGGCCGG CGCTCTGGGT GTCGTTGTTC
ACCGCCGATC CGGCCGTCAC CGCCGCCGCG CATACGTACT TCCACCTCGC CGGCCCCGGC
TTCGGATTCT TCGGCCTCGG CGTGACGCTG TATTTCGCCA GCCAGGGCGC CGCCAAGGTT
GGCGGGCCGG TGCTCGCCGC GACCGGACGG CTTGTGCTGG TGGCCCTCGG CGGATGGGCG
CTGGTCGCCT TCGGAGCACC GGCGTCGGCG ATGTTCGCGA TGGTGGCGGT GGCGATGGTG
GTGTACGGCC TCGGCAGCGC CGCGGCGATC TATCTGACAC GCTGGGTCAA ATGA
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| Protein sequence | MTIEAPADTP LPAPPPNRLL TAPILPTLVR LAIPNTIAML GTALVAVAET SYIGRLGTEP
LAAIALVFPF AMLTQMMSAG AMGGGVSSAI SRALGAGDTH RAGVLALHAI LIGIGGGLLF
TLVMLVFGRS LFALLGGRGD VLEQACSYSV VLFSGAVSIW LVNTLASILR GTGDMILPAG
ALLGVAALQV VIGGALGLGL FGMPRLGMPG VASGQAIAFT IGALFLLIYL GSGRSRLRLQ
LRSFRLQRPI FIDILKVGAL ACLAPLQSVL TILIFTKVLA SYGTTTLAGY GIGSRLEFLL
IPIAFAVGVA SIPMVGMAIG AGDIARARRV AWTAGVVSAV IVGLVGAVLA IWPALWVSLF
TADPAVTAAA HTYFHLAGPG FGFFGLGVTL YFASQGAAKV GGPVLAATGR LVLVALGGWA
LVAFGAPASA MFAMVAVAMV VYGLGSAAAI YLTRWVK
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