| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1882 |
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| Symbol | |
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| ID | 6409541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2029247 |
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| End bp | 2030851 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711770 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_001990883 |
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| Protein GI | 192290278 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCGAAA CAGTGGATTT CGTCGTGGTC GGCGGCGGCT CCGGCGGCTG CGCCGTCGCC
GGTCGCTTGT CGGAAGACAC CAACACGTCG GTGGCTCTGC TCGAAGCCGG CGGCACGGCC
GACAACTGGG TGGTGAAGAC GCCCTACGCG CTGTCGCTGA TGGTGCCGAG CAAGCTGAAC
AACTGGCATT TCGAGACGGT GCCGCAGCCC GGCCTCAACG GCCGCGTCGG CTATCAGCCG
CGCGGCAAAG GGCTTGGCGG CTCGTCGGCG ATCAACGCCA TGGTCTATAT CCGCGGCCAC
AAATGGGACT ACGACCATTG GGCCGAACTC GGCAATGCCG GCTGGTCCTA CGCCGATGTG
CTGCCGTACT TCAAGCGCTC GGAAAACAAC TCCGATTTCA ACGGCGCTTA TCACGGCCAG
AGCGGACCAT TGCACGTCAA CAAGCTGCGC ACCGACAATC CGGCACACGA GATCTTCCTG
CAGGCGGCGC GCGAGGCGCA GTTTCGCATC CGTGACGACT TCAACGGCGA GGAGCAGGAA
GGCCTCGGCT TGTATCAACT CACCCAGCAC GATGGCGAAC GCTGGAGCGC CGCGCGCGCC
TATGTGCATC CGCACATCGG GACGCGCTGC AATCTGCGGG TCGAAACCGA CGCGCAGGCG
ACCCGGATTC TGATCGAAGG CGGTCGCGCG GTCGGCGTCG CGTATCGGCA GAACGATCAG
ATCCGCGAGA TCCGCGCGCG CCGCGAAGTC ATCCTCGCGT CCGGCGCCTT CCAGTCGCCG
CAGCTGCTGA TGCTGTCGGG CATCGGCGAT GCCGCCGCGC TGAAGGCGCA CGGCATCGAC
GTGGTGCACC ATCTGCCGGG CGTCGGCCAG AACCTGCAGG ATCACCCGGA CTTCATCTTC
GCCTATCAGT CGGACAGCCC GTATTTCACC GGCACCAGCT TCACCGGGAT CGCCCGGCTG
CTGTCGACGA TCGGTCAATA TCGCCGCGAG GGCCGCGGAC CGCTGACCAC CAACTTCGCC
GAATGCGGTG GCTTCCTGAA GACACGTCCC GACGTCGACG TGCCGGATAT CCAGCTGCAT
TTCGGCATGG CGATGGTCGA CGATCACGGC CGCAAGCGGC ACTGGGGCAC GGGATTTTCC
TGCCATTTCT GTCTGCTGCG GCCGAAGAGC CGCGGCAGCG TCGGGCTCGC CAGCGCCGAT
CCCTTGGCGC CGCCGCGGAT CGATCCGAAC TTCTTCGGCG ATCCGGACGA CCTCGAAACC
ATGGTGGCGG GCTACAAGAC GACACAGCGG CTGATGGAGA CGCCGGCGCT ACGCGCCCTG
CAGCAGAAGG ATCTGTTCAC CGCCAATGTC CGCACCGACG ACGACATCCG CGCCATCCTG
CGCGCCCGCG TCGACACGGT GTATCACCCG GTCGGCACCT GCAAGATGGG CAGCGACGCG
ACGGCGGTAG TCGATCCGCG CCTGAACGTG CATGGCATCG GGGCCTTGCG CATCGTCGAC
GCCTCGGTGA TGCCGACTTT GATCGGCGGC AACACCAACG CCCCCACCAT CATGATCGGC
GAGAAAGCCG CCGACATGAT CCGCGAGGAG ATGCGGGCGA ACTGA
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| Protein sequence | MSETVDFVVV GGGSGGCAVA GRLSEDTNTS VALLEAGGTA DNWVVKTPYA LSLMVPSKLN
NWHFETVPQP GLNGRVGYQP RGKGLGGSSA INAMVYIRGH KWDYDHWAEL GNAGWSYADV
LPYFKRSENN SDFNGAYHGQ SGPLHVNKLR TDNPAHEIFL QAAREAQFRI RDDFNGEEQE
GLGLYQLTQH DGERWSAARA YVHPHIGTRC NLRVETDAQA TRILIEGGRA VGVAYRQNDQ
IREIRARREV ILASGAFQSP QLLMLSGIGD AAALKAHGID VVHHLPGVGQ NLQDHPDFIF
AYQSDSPYFT GTSFTGIARL LSTIGQYRRE GRGPLTTNFA ECGGFLKTRP DVDVPDIQLH
FGMAMVDDHG RKRHWGTGFS CHFCLLRPKS RGSVGLASAD PLAPPRIDPN FFGDPDDLET
MVAGYKTTQR LMETPALRAL QQKDLFTANV RTDDDIRAIL RARVDTVYHP VGTCKMGSDA
TAVVDPRLNV HGIGALRIVD ASVMPTLIGG NTNAPTIMIG EKAADMIREE MRAN
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