Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1862 |
Symbol | |
ID | 6409521 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 1998764 |
End bp | 2000113 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642711750 |
Product | coproporphyrinogen III oxidase |
Protein accession | YP_001990863 |
Protein GI | 192290258 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCGTCTG CCCTCGACAA ATACGCCAAG AGCTCGGTGC CGCGCTACAC CAGCTATCCC ACCGCACCGC ATTTCGCGAA GGACTTCCCG GAGTCGATCT ATCGCGGCTG GCTCGCCCAG CTCGACACCG ACGAGCCGGT TTCGCTGTAT CTTCATGTGC CGTTCTGCAA GCAGATGTGC TGGTACTGCG GCTGCAACAT GAAGCTGGCG GCGAAGTACG ATCCGGTCGC CGACTACGTC GAGCACCTGA TCGACGAAAT CGATCTGGTC GCGGACGCTC TCCCCGGCAC CATGCCGGTG CGTCATCTGC ATTTCGGCGG CGGCACCCCG ACGGTGATCG ATCCGCAGGA TCTCGGCGCG CTGATGACGC TGCTGCGCGA GCGCTTCGAG TTCCTGCCCG ATGCCGAGAT CGCGATCGAG AGCGACCCGC GCACGCTGAC CGAAGACATG GCCGCCAAGA TCGGCGAGCT CGGCTTCACC CGCGCCAGCT TCGGCGTGCA GGAATTCGAC CCGAAGGTGC AGGAAGCGAT CAACCGCGTC CAGCCGCCCG AAATGGTCGC GCGCGCGATG CAGCTGTTCA AATCGGCCGG CGTCGAGCGC ATCAATTTCG ACCTGATCTA CGGCCTGCCC TATCAGACCG CCGAAGACCT GCGCCGCACC GTCGAACAGT GCGTCGAGAT GAAGCCCGAC CGGGTCGCGC TATTCGGCTA CGCTCACGTG CCGTGGGTCG CCAAGAACCA GCGGATGATC CCGGACGAGT CGCTGCCGAA GCCGGAGCTG CGCGCCACGC AGGCCGAGAC CGCTGCCGAA GCCCTGGTGA AGGGCGGCTA CGTCCGCATC GGCATCGACC ATTTCGCGCT GCCGGGTGAC TCGCTCGCGA TCGCGGCCAA GACCGGCGAA CTGCACCGGA ATTTCCAGGG CTACACCTCC GACGCGGCGC AGACCCTGAT CGGCCTGGGC GCCACATCGA TCGGCCGCAC CCCGAGCGGC TATGTGCAGA ACATCAGCGA AACCGGTGCC TGGTCGCGCG CGGTCGAAGC CGGCAAGATC CCGGTCGCGC GTGGTCACGC TCTGACCCAG CAGGACAATC TGCGCGCCCA CGTGATCGAA CGCATCATGT GCGACGGCAA GGTCGACCTC GCCGCAGCCG GCAAGGCCTT CGGCTGTGGC GAAGACTGGT ACGCGCCGGA GCAGGACTCG CTCGCCGAAC TGCAGCGCGA CGGCGCCGTG GTGTGCAATG GCAGCAAGCT GACGCTGACG CCGGAAGGCG TCCGGCTGTC GCGTGTGGTG GCGTCGGTGT TCGACACCTA CCTGCGCAAC TCGTCGGTCC GGCACTCGAT CGCGGTCTGA
|
Protein sequence | MSSALDKYAK SSVPRYTSYP TAPHFAKDFP ESIYRGWLAQ LDTDEPVSLY LHVPFCKQMC WYCGCNMKLA AKYDPVADYV EHLIDEIDLV ADALPGTMPV RHLHFGGGTP TVIDPQDLGA LMTLLRERFE FLPDAEIAIE SDPRTLTEDM AAKIGELGFT RASFGVQEFD PKVQEAINRV QPPEMVARAM QLFKSAGVER INFDLIYGLP YQTAEDLRRT VEQCVEMKPD RVALFGYAHV PWVAKNQRMI PDESLPKPEL RATQAETAAE ALVKGGYVRI GIDHFALPGD SLAIAAKTGE LHRNFQGYTS DAAQTLIGLG ATSIGRTPSG YVQNISETGA WSRAVEAGKI PVARGHALTQ QDNLRAHVIE RIMCDGKVDL AAAGKAFGCG EDWYAPEQDS LAELQRDGAV VCNGSKLTLT PEGVRLSRVV ASVFDTYLRN SSVRHSIAV
|
| |