| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1856 |
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| Symbol | |
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| ID | 6409515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1992563 |
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| End bp | 1995484 |
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| Gene Length | 2922 bp |
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| Protein Length | 973 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642711744 |
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| Product | heavy metal translocating P-type ATPase |
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| Protein accession | YP_001990857 |
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| Protein GI | 192290252 |
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| COG category | [P] Inorganic ion transport and metabolism
[S] Function unknown |
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| COG ID | [COG2217] Cation transport ATPase
[COG3350] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.121057 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCGACG CGGAACATGC GGGGCACGAC GCCTCCGTCG AGAACACGGG TTGCTGCGGT
TCGGCAGGCG CGAATGCGCC GGCGACCTCG TCTTGCTGCG GCGGCGCCGG GAGCGTTGCG
GCGCCCAACG CGGCAACGGC GATCGATCCG GTGTGCGGCA TGACCGTCGA CACCGCGACG
GCGCAGCACC GTCTCGATCA CGACGGCCAG ACCTATTATT TCTGCTGCAG CGGTTGCCGC
GATACTTTTT CAGCCGATCC GGCCGACGTT CTGGCCAAGG CCGCCAAGCC GTTCACGCTG
CCGCCCAAGC CGGCGGCGAA GCTGCATCAG CTCACCGAGC TGCCGGCAAA GTCCTCGTGC
TGCGGCGGTC ATGGCGGCGA CGGGCATCAG CACGGCGAAG CCCCAGTCGC CATCAAGGCG
ATTGATCCGG TCTGCGGCAT GACGGTCGAC GTCGCGACCA GCAAGCACAG CTTCGAACAC
GACGGCACCA CCTATCACTT CTGCTGCGGC GGCTGCCGGA CGAAGTTCGC GGCCGACCCG
CAGCGCTATC TTGCCAAGGC AGCCAGTTCG TCCTGTTGCG GCGGTGCGGA CGATCACGCC
GATCATCATC ACGGCGCAGC CGCCGACGGC GGCAAGGTGA TCGATCCGGT GTGCGGCATG
AAGGTCGATC CCGCCACCAG CAAGCATCGC TTTGCCTACA AGGGCACGAC CTATCACTTC
TGCCGCGAAG CCTGCCAAAC CAAGTTCGCC GCGGATCCGG TGTCGTATCT GGACAAGAGC
AAGGCGAAGC CGGCCGCGGA TGTGCCGGAA GGCACCATCT ACACCTGCCC AATGGATCCG
CAGATCCGCC AGGTCGGCCC CGGCACCTGC CCGATCTGCG GCATGGCGCT CGAACCTGAA
TTGGTGTCGC TCGATGACAC GCCGAACCCC GAGCTCGTCG ACATGACGCG CCGGTTCTGG
ATCGGCCTCG TGCTGGCGTT GCCGGCTATT GTGCTCGAGA TGGGCGGTCA TCTCGTCGGC
GGCCATGGCC TGATCGATCC GGTGCTGTCG AACTGGATTC AGTTCGTCTC CGCGACCCCC
GTAGTGCTGT GGGCCGGGTG GCCGTTCTTC GTGCGCGGCT GGCAGTCGGT GATGACGCGC
AACCTCAACA TGTTCACGCT GGTCGCGATG GGCACCGGCG TCGCGTACAT CTACAGCCTG
GTGGCGACGG TGGCGCCGCA GCTCTTCCCA CCCGCCTTCC GCGGCCATGG CGGTACCGTG
CCGGTGTATT TCGAAGCCGC GGCGGTGATC ACCGTGCTGG TGCTGCTCGG GCAAGTGCTC
GAACTGCGCG CCCGCGAGGC CACTTCCGGT GCCATCAAGG CGCTGCTCGG GCTGGCGCCG
AAGACCGCCC GCAAGATTGA CACGGACGGC AGCGAGCACG AGGTCGAGAT CGACAGCCTC
AGCGTCGGCG ACAGGCTGCG CGTGCGTCCC GGCGAGAAGG TGCCGGTCGA CGGCACCATC
CTCGATGGCC GCGGCACGTT GGATGAGTCG CTGGTGACCG GCGAGTCGAT GCCGGTGAGC
CGTGAGACCG GCGGCAAGGT TGTGGCCGGC ACGCTGAACC AGTCCGGCGG TTTTGTGATG
CGGGCCGATC AGGTCGGCCG CGACACCATG TTGTCCCGCA TCGTGCAGAT GGTGGCGCAG
GCGCAGCGCT CGCGTGCCCC GATCCAGCGC GTCGCCGATC TGGTCGCCGG CTGGTTCGTG
CCGGCGGTGC TGCTCGCCGC GATCGCCGCC TTTGCGGCTT GGGCCGCGTT CGGGCCCGAA
CCGCGGCTGA CCTTTGCGCT GGTCGCCGCC GTCAGCGTGC TGATCATCGC CTGCCCCTGC
GCACTCGGCC TCGCTACGCC GATGTCGATC ATGGTCGGCG TCGGCCGCGG CGCACAGTCC
GGCGTGCTGA TCCGCAATGC TGAAGCGCTG GAGCGGATGG AGAAGGTCGA CACCCTGGTG
ATCGACAAGA CCGGCACGCT CACCGAAGGC CGGCCGAGCG TGGTTGCGAT CGTGGCCGCG
GACGGAACGG ATGAAACCGA GCTCTTGCGG CTTGCCGCCA GCGTCGAGCG CGCCAGTGAG
CATCCGCTCG CCGACGCCAT CGTCCGCGCC GCCAAGCAGC GCAACCTCGA TCTCGGCGAC
GTCACCGATT TCGACGCGCC GACCGGCAAA GGCGCGACCG GCAAGATCGC GGGCCGAACA
GTGGTGATCG GCAACCCGGC GTATCTCGCC TCGCTCGGTA TCGACACAGC TTCGCTCGCA
CCCAAGACCG AGCAGTTGCG CGGTGACGGT GACACCGTGG TGCACGTCGC GATCGACGGT
CGCTTCGCCG GGCTGTTCGC CATCGCCGAC GCGGTGAAGC CCTCAACGCC CGAAGCTCTG
AAGGCGCTCG CCGCCGATGG CATCAAGGTG ATCATGCTGA CCGGCGACAA CCGCGTCACT
GCGAACGCGG TGGCTCGCAA GCTGGGTATC GCCGACGTGG AAGCCGAGGT CCTGCCGGAT
CAGAAGAGCG CGGTGGTCGA GAAGCTTCGG CAGCAGGGCC GCGTCGTCGC GATGGCCGGA
GACGGCGTCA ACGACGCCCC GGCGCTGGCA GCAGCCGATG TCGGCATCGC GATGGGAACC
GGGACGGACG TAGCGATGGA GAGCGCCGGC GTCACGCTGC TTAAGGGCGA TCTCGGCGGC
ATCGTTCGCG CCCGCAAATT GTCACAGGCG ACGATGCGCA ACATCCGGCA GAACCTGTTT
TTTGCGTTCG TGTACAATTC AGCCGGCATC CCGATTGCCG CCGGCATTCT GTACCCGAGC
TTCGGCCTGT TATTGTCGCC GATCATTGCC GCCGCCGCGA TGTCGCTGTC ATCGGTAAGC
GTGATCGGCA ACGCGCTCCG CCTGCGCCGC ACCGCGTTGT AG
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| Protein sequence | MRDAEHAGHD ASVENTGCCG SAGANAPATS SCCGGAGSVA APNAATAIDP VCGMTVDTAT
AQHRLDHDGQ TYYFCCSGCR DTFSADPADV LAKAAKPFTL PPKPAAKLHQ LTELPAKSSC
CGGHGGDGHQ HGEAPVAIKA IDPVCGMTVD VATSKHSFEH DGTTYHFCCG GCRTKFAADP
QRYLAKAASS SCCGGADDHA DHHHGAAADG GKVIDPVCGM KVDPATSKHR FAYKGTTYHF
CREACQTKFA ADPVSYLDKS KAKPAADVPE GTIYTCPMDP QIRQVGPGTC PICGMALEPE
LVSLDDTPNP ELVDMTRRFW IGLVLALPAI VLEMGGHLVG GHGLIDPVLS NWIQFVSATP
VVLWAGWPFF VRGWQSVMTR NLNMFTLVAM GTGVAYIYSL VATVAPQLFP PAFRGHGGTV
PVYFEAAAVI TVLVLLGQVL ELRAREATSG AIKALLGLAP KTARKIDTDG SEHEVEIDSL
SVGDRLRVRP GEKVPVDGTI LDGRGTLDES LVTGESMPVS RETGGKVVAG TLNQSGGFVM
RADQVGRDTM LSRIVQMVAQ AQRSRAPIQR VADLVAGWFV PAVLLAAIAA FAAWAAFGPE
PRLTFALVAA VSVLIIACPC ALGLATPMSI MVGVGRGAQS GVLIRNAEAL ERMEKVDTLV
IDKTGTLTEG RPSVVAIVAA DGTDETELLR LAASVERASE HPLADAIVRA AKQRNLDLGD
VTDFDAPTGK GATGKIAGRT VVIGNPAYLA SLGIDTASLA PKTEQLRGDG DTVVHVAIDG
RFAGLFAIAD AVKPSTPEAL KALAADGIKV IMLTGDNRVT ANAVARKLGI ADVEAEVLPD
QKSAVVEKLR QQGRVVAMAG DGVNDAPALA AADVGIAMGT GTDVAMESAG VTLLKGDLGG
IVRARKLSQA TMRNIRQNLF FAFVYNSAGI PIAAGILYPS FGLLLSPIIA AAAMSLSSVS
VIGNALRLRR TAL
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