Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1850 |
Symbol | |
ID | 6409509 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 1987372 |
End bp | 1988580 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642711738 |
Product | putative ABC transporter, substrate binding protein |
Protein accession | YP_001990851 |
Protein GI | 192290246 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.164156 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGCCA GATCGATCGC GGCGGCGATG ATGACGGCTG CGCTGCTGTC ATCGTCCATC GCCCGCGCGC AAGTCTCCGA CGACGTCGTC AAGCTCGGCG TCCTCACCGA CATGAACGGC CCCGCCTCGA CGCCCACCGG CCAGGGCTCC GTCACCGCCG CGCAGATGGC GGTGGACGAT TTCGGCGGCA CCGTGCTCGG CAAGCCGATC CAGCTGATCG TCGGCGATCA TCAGCTCAAG CCCGATATTG GCGCCACGCT GGCGCGGCGC TGGTACGACG TCGAGCAGGT CGACCTGATC CTCGACGTGC CGGTCTCCGC CGTCGGCCTC GCGGTGCAGA ACATCGCCAA TGAAAAGAAG CGGCTGTTCA TCACCCAGTC GACCGGCGCC GCAGATTTTC ACGGCAAGTT CTGCAGCCCT TACGCAATGC AATGGGTATT CGACACGCAT GCCCTGGCAG TCGGCACCGC GCAGGAGGTG GTGAAGCGCG GCGGCGATAC CTGGTTCTTC ATCACCGATG ACTATGCCTT CGGCCAGTCG CTGGAGAAGG ACGCCGCCGC GATGGTCACC AAGACCGGCG GCAAGGTGCT CGGCTCGGTG CGACCGCCGT TCGCGACCTC GGACGTGTCG TCGTTCGTGC TACAGGCGCA GGCCTCGAAG GCCAAGATCA TCGGTATTGC GGCCGGTCCG CCCAACAACG TCAACGAGAT CAAGACCGGC GGCGAATTCG GCATCTTCAA GGGTGGCCAG CAGATGGCGG CACTGCTGGC GCTGATCACC GACGTGCATT CGCTCGGCCT CCCCACCGCG CAGGGCCTGC TGCTGACGAC GTCGTTCTAT TGGGACATGG ACGACAAGAC CCGGGAATGG TCGAAGCGCT ATTTCGCCAA GATGAACCGG ATGCCGACGA TGTGGCAGGC CGGCGTGTAT TCGGCGACCA TGCATTACCT GCAGGCGATC AAGGATGCCG GTACCGACGA TCCCCTGAAG GTCGCGGCCA AGATGCGGGA GAAACCGGTC AACGACTTCT TTGCCCGCGG CGGCAAACTG CGCGAGGATG GACTGATGGT CCACGACCTG ATGCTGGTGC AGGTGAAGAC CCCGGAGGAG TCGAAATATC CGTGGGACTA CTATAAGATT CTGGCCCACA CCCCCGGCGA TGCCGCCTTC GGCCCGCCCG ATCCGGCATG TTCGCTGGTG AAGAAGTAA
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Protein sequence | MIARSIAAAM MTAALLSSSI ARAQVSDDVV KLGVLTDMNG PASTPTGQGS VTAAQMAVDD FGGTVLGKPI QLIVGDHQLK PDIGATLARR WYDVEQVDLI LDVPVSAVGL AVQNIANEKK RLFITQSTGA ADFHGKFCSP YAMQWVFDTH ALAVGTAQEV VKRGGDTWFF ITDDYAFGQS LEKDAAAMVT KTGGKVLGSV RPPFATSDVS SFVLQAQASK AKIIGIAAGP PNNVNEIKTG GEFGIFKGGQ QMAALLALIT DVHSLGLPTA QGLLLTTSFY WDMDDKTREW SKRYFAKMNR MPTMWQAGVY SATMHYLQAI KDAGTDDPLK VAAKMREKPV NDFFARGGKL REDGLMVHDL MLVQVKTPEE SKYPWDYYKI LAHTPGDAAF GPPDPACSLV KK
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