| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1839 |
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| Symbol | |
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| ID | 6409498 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1975103 |
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| End bp | 1976365 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642711727 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_001990840 |
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| Protein GI | 192290235 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGGAGA AAGTCGAGCA AATCGACACG CCGCGGCCCA ATCTGGCGGT GCGCTGGGCG
GGTGGGTTGT GGCGTCATAA ATGGCCGGTG CTTGGCATCG CCCTGGTCCT GATCGCGGCG
GGTCTCGGGC TTGCCCGGTT GCTGCTCGGG CCCGAGGTGG TGGCGGCGTT GGTCCAGCGC
GGCAACCTGG TCCAGACCGT GGTAGCCAGC GGCCATATCG AAACACCTTA CCGCGTCGAA
ATCGCCAGCC AGATTACCGG CACCGTCAAG GACGTGCTGG TGAAGGAGGG CGAGCAGGTG
CATCAGGGCC AGCAGCTCGT CGCGATCGAG GCGTCGGAAC TGCAGGCCTC GGTGGTGCAG
GCCGAGGGTG CCGTAGCGCA GGCCCAGGCG CGGGTGCGCC AGCTTCGCGA GTTGACCAAG
CCGGCTGCCG ACGAAGCACT GAAGCAGGCC CAGGCCAATC TGCTCAATGC CCAGGCCGCT
TACGAGCGCG CCTCCAAGCT GGCGGCCTCC GGCTACGGCA CCAAGGCGAC GCTCGACGAC
GCCACCAAGA ATCTCGATGT CGCCCGCACC CAGGTGCGCA CCGCCGAGCT GCAGGTGTTC
ACCACCAGCC CTGGCGGCAG CGACTTCGTC ATGGCCGAAA CCCAGCTCAG CCAGGCCCTC
GCCAATCTCA ACACGGCGCA GGCGCGGCTC GGCTATGCCA CCATCGTGGC GCCGCGCGAC
GGCGTGCTGA TCACCCGCAA TGTCGAGCGC GGCACCGTGG TCCAGCCCGG CAAGGCGCTG
CTGGTGCTGG CGCCGGCTGG CGACATCCAG ATCGTGGTGC AGATCGACGA GAAGAATCTC
GGCCAGCTCG CGCTCGGCCA GCACGCGATG GCCTCCGCCG ACGCCTATCC CGACAAGCGC
TTCGACGCGA CGCTGAGCTA CATCAACCCG TCGGTCGACA TCAACCGCGC CTCGGTCGAG
ATCAAGCTCA AGGTCGATGA TCCGCCCGAC TATCTGCGCC AGGACATGAC GGTGTCGGTC
GACATCGCCA CCGCGCGGCG CGACGACGTG GTGATCGTGC CGGCGCGCGC GGTGAACGAC
GCTGCCGCGG CGCCCTACGT GCTGAAGGCG AGCGGCGGCC GCGCAGTTCG CCAGCCGGTC
AAACTCGGCC TGCGCGGCGT CGGCTTCTAC GAAGTGATCG ACGGGCTCGT TCCGGGAGAC
CGGGTGATTC CGCTCGCCAC CGGCGTCAAG CCGGATCAGC GCATCCGGGC GGTGCTGCGG
TGA
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| Protein sequence | MLEKVEQIDT PRPNLAVRWA GGLWRHKWPV LGIALVLIAA GLGLARLLLG PEVVAALVQR
GNLVQTVVAS GHIETPYRVE IASQITGTVK DVLVKEGEQV HQGQQLVAIE ASELQASVVQ
AEGAVAQAQA RVRQLRELTK PAADEALKQA QANLLNAQAA YERASKLAAS GYGTKATLDD
ATKNLDVART QVRTAELQVF TTSPGGSDFV MAETQLSQAL ANLNTAQARL GYATIVAPRD
GVLITRNVER GTVVQPGKAL LVLAPAGDIQ IVVQIDEKNL GQLALGQHAM ASADAYPDKR
FDATLSYINP SVDINRASVE IKLKVDDPPD YLRQDMTVSV DIATARRDDV VIVPARAVND
AAAAPYVLKA SGGRAVRQPV KLGLRGVGFY EVIDGLVPGD RVIPLATGVK PDQRIRAVLR
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