| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1793 |
|---|
| Symbol | |
|---|
| ID | 6409450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 1925670 |
|---|
| End bp | 1926743 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642711680 |
|---|
| Product | fatty acid desaturase |
|---|
| Protein accession | YP_001990795 |
|---|
| Protein GI | 192290190 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3239] Fatty acid desaturase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.522946 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTCGA ACATGCCCCA TGACGCAGAG GCCCCGGTCT CAGACGCGCG GCTTTGGACT
CGCATTCTGG CCGAATACGG CACGCCAAGC CGGTCGCGCA GCATCGCCGA GCTGACGATC
ACCGCCTTGC CGCTGGTGGC GCTGTGGAGT GCGGCCTGGT TCGTGTACTC GATGGGACAC
GCCTGGGCTT CGTTGCTGAT CGCTATTCCG GCGGCCGGGT TTCTACTCCG CCTGTTCATG
ATCCAGCACG ACTGCGGCCA CGGCGCATTC TTCAGCAAGC GACAAGCAAA CGACTGGGTC
GGCCGGGTGA TCGGCGTGAT CACGCTGACG CCCTACGATT GCTGGCGTCG CCAGCATGCC
ACGCATCACG CCACCACCGG CAATCTCGAT CGTCGCGGCG TCGGCGATCT CGATACGCTG
ACCGTGCGCG AATATAGCGA GCTGAGTTGG TGGGGCCGTT TGAAATATCG TCTCTACCGC
AACCCGCTGG TGATGTTCGG CCTCGGACCG GCCTACGTGT TTCTACTGCA ACAGCGGCTT
CCGGTCGGAC TGATGCGCGA TGGCTGGCGG CCTTGGGTGA GTGCGATGGC CACCAATGCG
GCGATCGCCG GCATCGTGGT GACGCTCACC TGGTTCATCG GCATCAAGGC ATTCCTGCTG
GTGCATCTGC CGATCATGCT ACTGGCCGCG ACTGCCGGGG TGTGGCTGTT CTACGTTCAG
CATCAGTTCG AGACCACGAC GTGGGAGCAC AACGAGCGCT GGAGCCTGCA TCAAGCCGCG
CTATATGGCA GCTCATACTA CGATCTGCCG GCACCGCTGA GCTGGTTCAC GGCCAATATC
GGGATGCACC ACGTGCATCA TCTGGCGAGC CGCATTCCGT ATTATCGCCT GCCGCGCGTG
CTGCACGATC ACCCCGAACT TCGCGCCATC GGCCGCGTCA CGTTGTGGCA GAGCTTCCGT
TGCATCCCGC TGGCCTTGTG GGACGAGGCC CAGCGACGTC TGGTGTCGTT CCGCGACGTC
CGCGCCCAAA AGCAGCAGCA AGCAACCGTG GGTCTCGCAA CGCGGCAGCT GTAG
|
|---|
| Protein sequence | MPSNMPHDAE APVSDARLWT RILAEYGTPS RSRSIAELTI TALPLVALWS AAWFVYSMGH
AWASLLIAIP AAGFLLRLFM IQHDCGHGAF FSKRQANDWV GRVIGVITLT PYDCWRRQHA
THHATTGNLD RRGVGDLDTL TVREYSELSW WGRLKYRLYR NPLVMFGLGP AYVFLLQQRL
PVGLMRDGWR PWVSAMATNA AIAGIVVTLT WFIGIKAFLL VHLPIMLLAA TAGVWLFYVQ
HQFETTTWEH NERWSLHQAA LYGSSYYDLP APLSWFTANI GMHHVHHLAS RIPYYRLPRV
LHDHPELRAI GRVTLWQSFR CIPLALWDEA QRRLVSFRDV RAQKQQQATV GLATRQL
|
|---|
| |