| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1754 |
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| Symbol | |
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| ID | 6409411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1882539 |
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| End bp | 1884404 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642711642 |
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| Product | ABC transporter related |
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| Protein accession | YP_001990757 |
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| Protein GI | 192290152 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component
[COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTGGG CGAGCAGATA CGTTCCGGAA GCCCTTGTCC TGCTGACGCT GGTGCTCGCT
CCGGTGGCGC TGAATCCGCT CGGGTTCTCG ACCGACCTGC TGACGCGGGT GCTGAACTGG
GGGCTGATCG GCCTCGGCTT TGATATCTTG TTCGGCCTGA CAGGGCTGTT GTCATTCGGC
CAGGCGGCGT TCTACGGCGT CGGCGGTTTC GTGACGGCCT ATCTGCTGGT GTCCGGCGCA
GTGGGCAGCG TTTGGCTCGC GTTACTTGTG GGTACGGCCT CAGCCGGGGT TTTCGGTCTC
GTGGTCGGCT GGTTCGCCGT CCGGCGGATC GGCATTTACT TCACGATGAT CACGCTGGCG
TTCGGCCAGA TGGCCTACTT CATCGAGAAT TCGCCGTTGT CGGATTACAC CGGCGGCGAG
AACGGGATCC CCGGCGTGCC GGCGCCGACA CTCGGCTTCG GAGCCGATGC GTTCAGGATC
AGTGCCGGAT TGCCGATGTA CGTACTCTTC GCGGTGATCT TCTTTCTCGG CTACGTACTG
GCACGGCGCA TCGTGCGCTC GCCGGTGGGC GCGATTCTGC TGGCCATCAA GGAGAACACC
GGACGCGTCG CGATGCTCGG CCACGACGTG CCCGCCTACA AGCTGACCGC GTTCGTCATC
GCTGCACTGT ACGCCGGCCT TGCCGGCGGC TTGCTCGGCT CGTTCCAGAG CTATATGCCG
CCCGACGCGT TCTCGCTCGA GACATCTGGA CAATTGGTGG TGCAGACCAT CGTCGGCGGT
GCCGGCACCC TGATTGGACC GTTGGTCGGC GCAGCGGTGT GGCTGTGGCT GCGCGACAAC
CTGCAACTGA TCCCCGGCTT CGCCATGCTT TGGAAGTTGG TGCTCGGCAT CGCGTTCATC
GTGCTGGTGA TCGGGCTGCG CCGCGGCGTC TGCGGAGAGA TCCTGCATTG GTGGAGCGAA
CGCACCAATC AAGCAGCGCT ACGCGCGGCC GAAGCCCGAA CGGAGGCGAT CGAGGCGCAC
AACATCGATG CCGTGGCGGG CGAGCAGCTG AGGCGCAGGG ATGTCGCTCT ATCGCTCGCC
GAGCCCGCGA CCGGCGACGG AGAGGTCGCG CTCGAGGCGC GATCGCTGGC GCGATACTAT
GGAGGCCTGC GCGCGGTCGA TGGCGTTTCT TTCAAGGTGC GTCGCGGATC GATCCATGCC
GTGATCGGCC CGAACGGCGC CGGCAAGAGC ACGCTGTTCA AAATGCTGCT CGACGAGATC
AGCCCGTCGT CGGGAGAGGT GCTGCTGTTC GGCGAGAGAT TGACCGGAGT TGGCGTCAGC
CGAGCCGCCC AGCGCGGGGT CGCCAAGAGC AATCAGCTCA ATCAGTTGTT CCCCAATCTG
TCGGTGCGCA ACAACCTGCG GATCGCAGCC TTAGCGCGCG GCCGCGGCCC CTTGCGCTTC
GATCTGCTGC GGCCGGCGGA TAGCCTGCCG GACGTCGAAG CACAGATCGC CGTCATCCTG
GATCAGCTCA ACCTCGTCGA GCGTGCCGAT ACGCCGGCGC ATGTGCTGGC TTATGGCGAG
AAGCGCCGGC TCGAAATCGG GATGGCGCTG GCGACGAGTC CGAACGTGCT GCTGCTCGAC
GAGCCGCTGG CCGGTATGAG CCCGGCGGAG AGGGCTGCGA CCTGTGCCTT CATCCGCGAT
ATTGCCCGAG CCCGAACCGT GGTGATCGTC GAGCACGATC TCGACGCCAT TTTCGGCCTC
GCCGAGCGCA TCACCGTGCT TTACGAGGGT CGGCTGCTCG CGGACGGCAC TGCCGACGAG
GTCCGCCGCA ACCCGGCCGT CCAGGAGGCT TATCTCGGAG GGCTGCACGC GCATGAGTCT
GCTTGA
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| Protein sequence | MKWASRYVPE ALVLLTLVLA PVALNPLGFS TDLLTRVLNW GLIGLGFDIL FGLTGLLSFG
QAAFYGVGGF VTAYLLVSGA VGSVWLALLV GTASAGVFGL VVGWFAVRRI GIYFTMITLA
FGQMAYFIEN SPLSDYTGGE NGIPGVPAPT LGFGADAFRI SAGLPMYVLF AVIFFLGYVL
ARRIVRSPVG AILLAIKENT GRVAMLGHDV PAYKLTAFVI AALYAGLAGG LLGSFQSYMP
PDAFSLETSG QLVVQTIVGG AGTLIGPLVG AAVWLWLRDN LQLIPGFAML WKLVLGIAFI
VLVIGLRRGV CGEILHWWSE RTNQAALRAA EARTEAIEAH NIDAVAGEQL RRRDVALSLA
EPATGDGEVA LEARSLARYY GGLRAVDGVS FKVRRGSIHA VIGPNGAGKS TLFKMLLDEI
SPSSGEVLLF GERLTGVGVS RAAQRGVAKS NQLNQLFPNL SVRNNLRIAA LARGRGPLRF
DLLRPADSLP DVEAQIAVIL DQLNLVERAD TPAHVLAYGE KRRLEIGMAL ATSPNVLLLD
EPLAGMSPAE RAATCAFIRD IARARTVVIV EHDLDAIFGL AERITVLYEG RLLADGTADE
VRRNPAVQEA YLGGLHAHES A
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