| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1731 |
|---|
| Symbol | |
|---|
| ID | 6409388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1854785 |
|---|
| End bp | 1856407 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642711619 |
|---|
| Product | light-independent protochlorophyllide reductase subunit B |
|---|
| Protein accession | YP_001990734 |
|---|
| Protein GI | 192290129 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2710] Nitrogenase molybdenum-iron protein, alpha and beta chains |
|---|
| TIGRFAM ID | [TIGR01278] light-independent protochlorophyllide reductase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCTCA CCGTATGGAC CTATGAAGGC CCTCCCCATG TCGGCGCGAT GCGCGTTGCC
ACGGGTATGG AGAAATTGCA CTACGTGCTG CACGCTCCGC AGGGCGACAC CTACGCCGAT
CTGTTGTTCA CGATGATCGA GCGCCGCAAC AAGCGGCCGC CGGTGACCTA CACGACGTTC
GCCGCGCGCG ATCTCGGCAA GGACACCGCC GAGCTGTTCA TGAGCGCGGC CCGCAATGCC
TATGCGCGCT TCAAGCCGCA GGCGATGATC GTCGGCGCGT CCTGCACCGG CTCGCTGATT
CAGGACGATC CGGGCGGGCT CGCCAAGTCG CTCGGGTTCT CGATCCCGGT GATCCCGATC
GATCTGCCGG CGTATCAGCG CAAGGAAAAC TGGGGCGCGT CCGAGACGTT CTATCAGCTG
GTGCGCGCGA TCGCCGGTCC CAAGGCGCCG GCGCCCGGTA CCAAGCGCCC TGAACGGGCC
GCAGGTCAGC GCGCCAAGTG CAATCTGCTC GGGCCGACCG CGCTCGGCTT CCGTCATCGC
GACGACATCA CCGAGATCAC CAGGCTGCTC GGCCAGCTCG GCATTGACGT GAACGTGGTG
GCGCCGATGG GCGCGACGCC GGCGGATCTG ACCCGTCTCG GCGAGGCCGA CTTCAACGTC
GTGCTGTATC CGGAAGTCGC CTCGCAGGCG GCGTCCTGGC TGCAGCGGAT CTTCCATCAG
CCGTTCACCA AGACGATTCC GATCGGCGTG TCGGCGACGC GCGAATTCGT GCGCGAAGTC
GCGGGCCTTG CCGGCGTCGA TCCGGAGCCG GTGCTGGCTG CGGCCTCGAC CCGGCTGCCG
TGGTACTCGC ATTCGGTCGA CTCGACCTAC CTGACCAACA AGCGCGTCTT CATCTTCGGC
GATGCCACCC ATGCGATCGC CTCGGCGCGA ATCGCATCGG AGGAGCTTGG CTTCAAGGTG
GTCGGGCTCG GCACCTACAG CCGTGAATTC GGCCGCGACG TCCGCGAGGC GGCGGCGAAA
TACGGTGTCG AGGCGCTGAT CACCGACGAC TATCTCGAAG TCGAAGCCAA GGTCGCCGAA
CTGCATCCGG AGCTGGTGCT CGGGACCCAG ATGGAGCGCC ACATCGCCAA GCGCCTCGGC
GTGCCCTGCG CGGTGATCTC GGCGCCGGTG CACGTCCAGG ATTTCCCCGC GCGCTATGCG
CCGCAGATGG GATTCGAAGG CGCCAATGTG ATCTTCGACA CCTGGGTCCA TCCGCTGATG
ATGGGCCTCG AAGAGCATCT TCTGGCGATG TTCAAGGACG ATTTCGAATT CAAGGACGGC
GCGTTGCCGT CACATCTCGG CACCGGCCAC GCACCGGCTT CCGCGCCCGC AGCGGCGGAG
GTCGCCGTTG CGCTGCCGCA AAGCGCGCCG GTTCTCGACG GTGCAGCATC TAACCCGGCT
CCGGTCGCAA CCGCCCCCAC AGGGGCCGTG TGGGCGCCGG AAGCCGAAAA GGAACTGCTG
AAGATACCGT TCTTCGTCCG CGGCAAGGCT CGCCGAAATA CCGAGCGCTT CGCCAACGAA
AACGGTGTCG CAACCATTAC TGTCGAGACC TTGTACGATG CCAAAGCGCA CTTCGCCCGC
TGA
|
|---|
| Protein sequence | MQLTVWTYEG PPHVGAMRVA TGMEKLHYVL HAPQGDTYAD LLFTMIERRN KRPPVTYTTF
AARDLGKDTA ELFMSAARNA YARFKPQAMI VGASCTGSLI QDDPGGLAKS LGFSIPVIPI
DLPAYQRKEN WGASETFYQL VRAIAGPKAP APGTKRPERA AGQRAKCNLL GPTALGFRHR
DDITEITRLL GQLGIDVNVV APMGATPADL TRLGEADFNV VLYPEVASQA ASWLQRIFHQ
PFTKTIPIGV SATREFVREV AGLAGVDPEP VLAAASTRLP WYSHSVDSTY LTNKRVFIFG
DATHAIASAR IASEELGFKV VGLGTYSREF GRDVREAAAK YGVEALITDD YLEVEAKVAE
LHPELVLGTQ MERHIAKRLG VPCAVISAPV HVQDFPARYA PQMGFEGANV IFDTWVHPLM
MGLEEHLLAM FKDDFEFKDG ALPSHLGTGH APASAPAAAE VAVALPQSAP VLDGAASNPA
PVATAPTGAV WAPEAEKELL KIPFFVRGKA RRNTERFANE NGVATITVET LYDAKAHFAR
|
|---|
| |