| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1728 |
|---|
| Symbol | |
|---|
| ID | 6409385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 1851798 |
|---|
| End bp | 1852679 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642711616 |
|---|
| Product | cobalamin B12-binding domain protein |
|---|
| Protein accession | YP_001990731 |
|---|
| Protein GI | 192290126 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5012] Predicted cobalamin binding protein |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGACT GGGACGACCC TCCGATCGCG GCCATTGCCG ACGCCGAACC GGCCACCCTC
CCGGTGACAC CCCTACCCCC TCCGATCCCG GAGCCGCTCT GGCGAGCACG CCCCCGGCCC
CAGACCTCTG CCATTGCCCT ATCGCTTCGA ACGCTCACCC ATTCCCGAAT TAAGCTGCAC
ACGATCTCGT TTTCGAACAT GTCCGCCCCG GTCGATCCTG GTACGCCTTT CGCTGTGCAG
CACTTCACCC TGTTGGTTCT CGGTCACGAC GAGACTGCTG CCTTCGACTA CGTGGAGAGT
CTTATCGCGC GGGGGACTGC CACCGAATTG ATCTTCCTCA ACCTGCTCGC GCCGGCCGCG
CAGCGCCTCG GCGAGATGTG GGAACACGAC AGCGCGAACT TCCTCAACGT CACGCTCGGG
GTTAGTCGGC TGCAACGAAT TCTTCGCCAT CTCGGCGAAA GCGTCGCCGA TGATCACCGC
GCCAGTGGTG GTGGCACAGT GCTGCTGACC ACACTGGATG GCGAGCAACA CAGCTTCGGG
CTGACGATGG TCGCAGAGTT CTTCAGGCGC GACGGCTGGG ACATCTGGAC CGGCCCTTTC
AACACGCGTC GCGAGATGAT GTCCCTGGTG CAGGACCGTA TGTTCGACGT CGTCGGCTTC
TCGGTCGGCG GCGATCGCCA CCTCGATCAA CTCAAGCGCT ACGTCCAGGA CATCCGCCGC
GACTCGCGCA ATCGCGATGT GGCAATCCTG CTCGGCGGCC CGCTGCTGCT GCTCCGGCCG
GAACTGATCC GCTCGATCGG AGCGGACGGT TATGCGGTCG ATGGGGCAAC CGCGCCGCGG
CTCGCCCGCG CGCTGGTCCA CGCCGCGCGG AACAAGAGCT GA
|
|---|
| Protein sequence | MTDWDDPPIA AIADAEPATL PVTPLPPPIP EPLWRARPRP QTSAIALSLR TLTHSRIKLH
TISFSNMSAP VDPGTPFAVQ HFTLLVLGHD ETAAFDYVES LIARGTATEL IFLNLLAPAA
QRLGEMWEHD SANFLNVTLG VSRLQRILRH LGESVADDHR ASGGGTVLLT TLDGEQHSFG
LTMVAEFFRR DGWDIWTGPF NTRREMMSLV QDRMFDVVGF SVGGDRHLDQ LKRYVQDIRR
DSRNRDVAIL LGGPLLLLRP ELIRSIGADG YAVDGATAPR LARALVHAAR NKS
|
|---|
| |