| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1726 |
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| Symbol | |
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| ID | 6409383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1848748 |
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| End bp | 1850943 |
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| Gene Length | 2196 bp |
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| Protein Length | 731 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711614 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001990729 |
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| Protein GI | 192290124 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCAGGTC ATGCCTCTGG CAGCCCCGCA TTCGGGACCG CCGATCTTTC GAATTGCGAA
CGTGAAGAGA TCCACCTCGC CGGCTCGATC CAGCCGCATG GCGCGCTTCT GGTCGTCAGC
GAGCCGGATC ATCGCATCAT CCAGGCCAGC GCCAACGCCG CGGAATTTCT GAATCTCGGA
AGCGTGCTCG GCGTTCCGCT CGCCGAGATC GACGGCGATC TGTTGATCAA GATCCTGCCG
CATCTCGATC CCACCGCCGA AGGCATGCCG GTCGCGGTGC GCTGCCGGAT CGGCAATCCC
TCCACGGAGT ACGACGGTCT GATGCATCGG CCTCCGGAAG GCGGGCTGAT CATCGAGCTC
GAACGTGCCG GCCCGCCGAT CGATCTGTCC GGCACGCTGG CGCCGGCGCT GGAGCGGATC
CGCACGGCGG GCTCGCTGCG CGCGCTGTGC GATGACACCG CGCTGCTGTT TCAGCAGTGC
ACCGGCTACG ACCGGGTGAT GGTGTATCGC TTCGACGAGC AGGGCCACGG CGAAGTGTTC
TCCGAGCGCC ACGTGCCCGG GCTCGAATCC TATTTCGGCA ACCGCTATCC GTCGTCGGAC
ATTCCGCAGA TGGCGCGGCG GCTGTACGAG CGGCAGCGCG TCCGCGTGCT GGTCGACGTC
AGCTATCAGC CGGTGCCGCT GGAGCCGCGG CTGTCGCCGC TGACCGGGCG CGATCTCGAC
ATGTCGGGCT GCTTCCTGCG CTCGATGTCG CCGATCCATC TGCAGTACCT GAAGAACATG
GGCGTGCGCG CCACCCTGGT GGTGTCGCTG GTGGTCGGCG GCAAGCTGTG GGGCCTGGTT
GCCTGTCATC ATTATCTGCC GCGCTTCATG CATTTCGAGC TGCGGGCGAT CTGCGAACTG
CTCGCCGAAG CGATCGCGAC GCGGATCACC GCGCTTGAGA GCTTCGCGCA GAGCCAGTCG
GAGCTGTTCG TGCAGCGGCT CGAACAGCGC ATGATCGAAG CGATTACCCG TGAAGGCGAT
TGGCGCGCAG CGATTTTCGA CACCAGCCAA TCGATCCTGC AGCCGCTGCA CGCCGCCGGT
TGCGCGCTGG TGTACGAAGA CCAGATCAGG ACCATCGGCG ACGTGCCTTC CACGCAGGAT
GTGCGCGAGA TCGCCGGGTG GCTCGATCGC CAGCCGCGCG CGGCGGTGAC CTCGACCGCG
TCGCTCGGTC TCGACGTGCC GGAGCTCGCG CATCTGACGC GGATGGCGAG CGGCGTGGTC
GCGGCGCCGA TTTCGGATCA TCGCGGCGAG TTTCTGATGT GGTTCCGCCC CGAGCGCGTC
CACACCGTTA CCTGGGGCGG CGATCCGAAG AAGCCGTTCA CGATGGGCGA TACACCGGCG
GATCTGTCGC CGCGGCGCTC CTTCGCCAAA TGGCATCAGG TTGTCGAAGG CACGTCCGAT
CCGTGGACGG CCGCCGATCT CGCCGCGGCT CGCACCATCG GTCAGACCGT CGCCGACATC
GTGCTGCAAT TCCGCGCGGT GCGGACACTG ATCGCCCGCG AACAGTACGA ACAGTTTTCG
TCCCAGGTGC ACGCTTCGAT GCAGCCGGTG CTGATCACCG ACGCCGAAGG CCGCATCCTG
CTGATGAACG ACTCGTTCCG CGACATGTTG CCGGCGGGTT CGCCATCCGC CGTCCATCTC
GACGATCTCG CCGGGTTCTT CGTCGAATCG AACGATTTCC TGCGCAACGT CGCCGAACTG
ATCGATCACG GCCGCGGGTG GCGCGGCGAA GTTCTGCTGC GCGGCGCAGG CAACCGCCCG
TTGCCGCTGG CAGTGCGCGC CGATCCGGTG ACGCGCACGG AGGACCAGTC GCTCGGCTTC
GTGCTGATCT TCAGCGACGC TACCGATCGT CGCACCGCAG ATGCCGCACG CACGCGTTTC
CAGGAAGGCA TTCTTGCCAG CGCACGTCCC GGCGTGCGGC TCGACTCCAA GTCCGACCTG
TTGCACGAGA AGCTGCTGTC CGCGCTGGTC GAGAACGCGC AGCTTGCCGC ATTGGAAATC
ACTTACGGCG TCGAGACCGG ACGCATCGCC GAGCTGCTCG AAGGCGTCCG CCAGTCGATG
CTGCGCACCG CCGAAGTGCT CGGCCATCTG GTGCAGCACG CGGCGCGCAC GGCCGGCAGC
GACAGCTCGA GCAATGGCTC GCAGAACAAG AAGTAG
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| Protein sequence | MAGHASGSPA FGTADLSNCE REEIHLAGSI QPHGALLVVS EPDHRIIQAS ANAAEFLNLG
SVLGVPLAEI DGDLLIKILP HLDPTAEGMP VAVRCRIGNP STEYDGLMHR PPEGGLIIEL
ERAGPPIDLS GTLAPALERI RTAGSLRALC DDTALLFQQC TGYDRVMVYR FDEQGHGEVF
SERHVPGLES YFGNRYPSSD IPQMARRLYE RQRVRVLVDV SYQPVPLEPR LSPLTGRDLD
MSGCFLRSMS PIHLQYLKNM GVRATLVVSL VVGGKLWGLV ACHHYLPRFM HFELRAICEL
LAEAIATRIT ALESFAQSQS ELFVQRLEQR MIEAITREGD WRAAIFDTSQ SILQPLHAAG
CALVYEDQIR TIGDVPSTQD VREIAGWLDR QPRAAVTSTA SLGLDVPELA HLTRMASGVV
AAPISDHRGE FLMWFRPERV HTVTWGGDPK KPFTMGDTPA DLSPRRSFAK WHQVVEGTSD
PWTAADLAAA RTIGQTVADI VLQFRAVRTL IAREQYEQFS SQVHASMQPV LITDAEGRIL
LMNDSFRDML PAGSPSAVHL DDLAGFFVES NDFLRNVAEL IDHGRGWRGE VLLRGAGNRP
LPLAVRADPV TRTEDQSLGF VLIFSDATDR RTADAARTRF QEGILASARP GVRLDSKSDL
LHEKLLSALV ENAQLAALEI TYGVETGRIA ELLEGVRQSM LRTAEVLGHL VQHAARTAGS
DSSSNGSQNK K
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