Gene Rpal_1726 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1726 
Symbol 
ID6409383 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp1848748 
End bp1850943 
Gene Length2196 bp 
Protein Length731 aa 
Translation table11 
GC content66% 
IMG OID642711614 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001990729 
Protein GI192290124 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCAGGTC ATGCCTCTGG CAGCCCCGCA TTCGGGACCG CCGATCTTTC GAATTGCGAA 
CGTGAAGAGA TCCACCTCGC CGGCTCGATC CAGCCGCATG GCGCGCTTCT GGTCGTCAGC
GAGCCGGATC ATCGCATCAT CCAGGCCAGC GCCAACGCCG CGGAATTTCT GAATCTCGGA
AGCGTGCTCG GCGTTCCGCT CGCCGAGATC GACGGCGATC TGTTGATCAA GATCCTGCCG
CATCTCGATC CCACCGCCGA AGGCATGCCG GTCGCGGTGC GCTGCCGGAT CGGCAATCCC
TCCACGGAGT ACGACGGTCT GATGCATCGG CCTCCGGAAG GCGGGCTGAT CATCGAGCTC
GAACGTGCCG GCCCGCCGAT CGATCTGTCC GGCACGCTGG CGCCGGCGCT GGAGCGGATC
CGCACGGCGG GCTCGCTGCG CGCGCTGTGC GATGACACCG CGCTGCTGTT TCAGCAGTGC
ACCGGCTACG ACCGGGTGAT GGTGTATCGC TTCGACGAGC AGGGCCACGG CGAAGTGTTC
TCCGAGCGCC ACGTGCCCGG GCTCGAATCC TATTTCGGCA ACCGCTATCC GTCGTCGGAC
ATTCCGCAGA TGGCGCGGCG GCTGTACGAG CGGCAGCGCG TCCGCGTGCT GGTCGACGTC
AGCTATCAGC CGGTGCCGCT GGAGCCGCGG CTGTCGCCGC TGACCGGGCG CGATCTCGAC
ATGTCGGGCT GCTTCCTGCG CTCGATGTCG CCGATCCATC TGCAGTACCT GAAGAACATG
GGCGTGCGCG CCACCCTGGT GGTGTCGCTG GTGGTCGGCG GCAAGCTGTG GGGCCTGGTT
GCCTGTCATC ATTATCTGCC GCGCTTCATG CATTTCGAGC TGCGGGCGAT CTGCGAACTG
CTCGCCGAAG CGATCGCGAC GCGGATCACC GCGCTTGAGA GCTTCGCGCA GAGCCAGTCG
GAGCTGTTCG TGCAGCGGCT CGAACAGCGC ATGATCGAAG CGATTACCCG TGAAGGCGAT
TGGCGCGCAG CGATTTTCGA CACCAGCCAA TCGATCCTGC AGCCGCTGCA CGCCGCCGGT
TGCGCGCTGG TGTACGAAGA CCAGATCAGG ACCATCGGCG ACGTGCCTTC CACGCAGGAT
GTGCGCGAGA TCGCCGGGTG GCTCGATCGC CAGCCGCGCG CGGCGGTGAC CTCGACCGCG
TCGCTCGGTC TCGACGTGCC GGAGCTCGCG CATCTGACGC GGATGGCGAG CGGCGTGGTC
GCGGCGCCGA TTTCGGATCA TCGCGGCGAG TTTCTGATGT GGTTCCGCCC CGAGCGCGTC
CACACCGTTA CCTGGGGCGG CGATCCGAAG AAGCCGTTCA CGATGGGCGA TACACCGGCG
GATCTGTCGC CGCGGCGCTC CTTCGCCAAA TGGCATCAGG TTGTCGAAGG CACGTCCGAT
CCGTGGACGG CCGCCGATCT CGCCGCGGCT CGCACCATCG GTCAGACCGT CGCCGACATC
GTGCTGCAAT TCCGCGCGGT GCGGACACTG ATCGCCCGCG AACAGTACGA ACAGTTTTCG
TCCCAGGTGC ACGCTTCGAT GCAGCCGGTG CTGATCACCG ACGCCGAAGG CCGCATCCTG
CTGATGAACG ACTCGTTCCG CGACATGTTG CCGGCGGGTT CGCCATCCGC CGTCCATCTC
GACGATCTCG CCGGGTTCTT CGTCGAATCG AACGATTTCC TGCGCAACGT CGCCGAACTG
ATCGATCACG GCCGCGGGTG GCGCGGCGAA GTTCTGCTGC GCGGCGCAGG CAACCGCCCG
TTGCCGCTGG CAGTGCGCGC CGATCCGGTG ACGCGCACGG AGGACCAGTC GCTCGGCTTC
GTGCTGATCT TCAGCGACGC TACCGATCGT CGCACCGCAG ATGCCGCACG CACGCGTTTC
CAGGAAGGCA TTCTTGCCAG CGCACGTCCC GGCGTGCGGC TCGACTCCAA GTCCGACCTG
TTGCACGAGA AGCTGCTGTC CGCGCTGGTC GAGAACGCGC AGCTTGCCGC ATTGGAAATC
ACTTACGGCG TCGAGACCGG ACGCATCGCC GAGCTGCTCG AAGGCGTCCG CCAGTCGATG
CTGCGCACCG CCGAAGTGCT CGGCCATCTG GTGCAGCACG CGGCGCGCAC GGCCGGCAGC
GACAGCTCGA GCAATGGCTC GCAGAACAAG AAGTAG
 
Protein sequence
MAGHASGSPA FGTADLSNCE REEIHLAGSI QPHGALLVVS EPDHRIIQAS ANAAEFLNLG 
SVLGVPLAEI DGDLLIKILP HLDPTAEGMP VAVRCRIGNP STEYDGLMHR PPEGGLIIEL
ERAGPPIDLS GTLAPALERI RTAGSLRALC DDTALLFQQC TGYDRVMVYR FDEQGHGEVF
SERHVPGLES YFGNRYPSSD IPQMARRLYE RQRVRVLVDV SYQPVPLEPR LSPLTGRDLD
MSGCFLRSMS PIHLQYLKNM GVRATLVVSL VVGGKLWGLV ACHHYLPRFM HFELRAICEL
LAEAIATRIT ALESFAQSQS ELFVQRLEQR MIEAITREGD WRAAIFDTSQ SILQPLHAAG
CALVYEDQIR TIGDVPSTQD VREIAGWLDR QPRAAVTSTA SLGLDVPELA HLTRMASGVV
AAPISDHRGE FLMWFRPERV HTVTWGGDPK KPFTMGDTPA DLSPRRSFAK WHQVVEGTSD
PWTAADLAAA RTIGQTVADI VLQFRAVRTL IAREQYEQFS SQVHASMQPV LITDAEGRIL
LMNDSFRDML PAGSPSAVHL DDLAGFFVES NDFLRNVAEL IDHGRGWRGE VLLRGAGNRP
LPLAVRADPV TRTEDQSLGF VLIFSDATDR RTADAARTRF QEGILASARP GVRLDSKSDL
LHEKLLSALV ENAQLAALEI TYGVETGRIA ELLEGVRQSM LRTAEVLGHL VQHAARTAGS
DSSSNGSQNK K