| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1718 |
|---|
| Symbol | |
|---|
| ID | 6409375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1840849 |
|---|
| End bp | 1842282 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642711606 |
|---|
| Product | transcriptional regulator, Fis family |
|---|
| Protein accession | YP_001990721 |
|---|
| Protein GI | 192290116 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR02040] transcriptional regulator PpsR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.57996 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAAGTGT TCAAATCTCC GAAGGAGTCG CTGGGGGATC TCGGTGCACA ATCTGCCGCG
AAGCTGATCG CCGCTGCGAC CGATGTCGCG CTGGTGGTCG ATCCGCAGGG TGTGATCCGG
GACGTAGCGT TTACTAGAGA GGAACTGGCC CACGAGCTGG ACGGCCAGAG CCGTTGGCTC
GGCTCGCGGC TCGTTGACAT CGTCACCTCT GATACCCAGC CGAAGATCCG CGAATTGCTG
CTCGACGCCA CCGTGCGCGA CGCCCCGACC TGGCGGCAGG TCAACCATCC TTCGCCGAAC
GGCGAAGACA TTCCCGTGCT GTATTCCGCG ATCAACTTTG GGCGAGACGA TCGCCTGTTG
GTGGTAGGGC GTGATCTGCG TCAACTCGCC ATGATGCAGC AGCGGCTAAT CAACGCGCAG
CAATCGATGG AGCGCGACTA CATCCGGCTG CGGCACGCCG AGACGCGATA TCGGCTGTTG
TTCCAGGTGT CTTCTGAAGC GGTGATGATC GTGGATGCGG CGAGTGAACT GATCGTCGAC
GCCAACCCGG CGACGCTGGC CATGTTCGAT ACCAGCGCGC CCGAGGCGTT GAATGCGCCG
GTGATTGGAT TCGTCGACGG CGCCGATCAG CAGACGGTGT TGAACCTGTT CGCCGATGTG
CGCTCAACCG GCCGCGACGG ACGCGCCCGA ATCAAGTTGG CCGATGGCCG CCGCGAATGT
GAGTTGTCGG CGTCGCTGTT CCGTCAGGAA AACGCGTCGC TATATCTGGT GCGGCTGGCG
TCGCACGGCG CGCCGCCCGA GGCCGGCAGC GCCAAGACCG CGTCGCTGCT GCTCAACTAT
TTCGAATCCG CCGCCGATGC GCTGGTGATC ACGCAATATG ACGGCCGGGT GGTCCGCGCC
AATCTGGCGT TCCTGGAGAT GGCGCAGCTC GGCAGCGCCG AGCAGGCGCG CGGCGAGCTG
CTCGATCGCT GGCTCGGCCG CACCGGCGTC GACCTGTCGG TGGCGCTCGC CAATCTGCGC
CAGAGCGGGA CGATCAAACT GTTCGCCACC GTGCTTCGCG GTGAGTACGG CGCGGTCGCC
GAAGTCGAAG TGTCGGCGGT CGCCCTCAAG GATAGTGACG ACAAGCCTTG CTTCGGCTTT
GCGATCCGCA ATGTCGAGAA GCGGCTGACC ACGGCAGCGA CGTCGAAGCG CGAACTGCCG
CGCTCGGTGG CGCAGCTCAC CGAACTGATC GGCCGGGTTC CGTTGCGCGA CCTCGTTCGC
GAGACCACCG ACGTGATCGA AAAATTGTCG ATCGAGGCGG CGCTGGAATT GACCGGCGAC
AATCGCGCTT CGGCTGCGGA TATGCTCGGA CTGAGCCGCC AGAGCCTCTA CGTGAAATTG
CGCCGGTACG GTCTGGCGGA ACATGCGCCG GAAGGAGACG GAGCCGATGA GTAA
|
|---|
| Protein sequence | MQVFKSPKES LGDLGAQSAA KLIAAATDVA LVVDPQGVIR DVAFTREELA HELDGQSRWL
GSRLVDIVTS DTQPKIRELL LDATVRDAPT WRQVNHPSPN GEDIPVLYSA INFGRDDRLL
VVGRDLRQLA MMQQRLINAQ QSMERDYIRL RHAETRYRLL FQVSSEAVMI VDAASELIVD
ANPATLAMFD TSAPEALNAP VIGFVDGADQ QTVLNLFADV RSTGRDGRAR IKLADGRREC
ELSASLFRQE NASLYLVRLA SHGAPPEAGS AKTASLLLNY FESAADALVI TQYDGRVVRA
NLAFLEMAQL GSAEQARGEL LDRWLGRTGV DLSVALANLR QSGTIKLFAT VLRGEYGAVA
EVEVSAVALK DSDDKPCFGF AIRNVEKRLT TAATSKRELP RSVAQLTELI GRVPLRDLVR
ETTDVIEKLS IEAALELTGD NRASAADMLG LSRQSLYVKL RRYGLAEHAP EGDGADE
|
|---|
| |