| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1700 |
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| Symbol | |
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| ID | 6409357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1824252 |
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| End bp | 1825319 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711588 |
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| Product | Squalene/phytoene synthase |
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| Protein accession | YP_001990703 |
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| Protein GI | 192290098 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.898001 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCTGC AATCCGATAT GTTGGCCCAA TCCGACATGC TGGCCTGCCG TGAGATGATC
AAGGAAGGCT CGCACACCTT TCACGCGGCC TCCAAGGTGC TGCCGCGGCG GATCAGTGAT
CCGGCGATCG CGCTGTACGC GTTCTGCCGC GTCGCCGACG ACGCCGTGGA TCTCGGTCTC
GACCGCGCCG CCGCGGTCGA AGTGCTGAAG GACCGGCTCG ATCGCGCCTG CCGCGGCGTG
CCGCGTGCCT ATCCGTCCGA CCGCGCCTTC GCTGATGTGG TGGCGCGGTT TTCGATTCCG
CCGGCAATTC CCGAGGCGCT GATCGAGGGC CTGGAATGGG ATGCGCAGGG CCGTCGCTTC
GAGACGCTGT CGGATCTGTA TTCGTATTGC GCCCGCGTCG CCGGCACCGT TGGCGTGATG
ATGACGCTGG TGATGGGCCA GCGCAAACCC GACATCGTGG CGCGTGCCTG CGATCTCGGC
TGCGCGATGC AACTCACCAA TATCGCCCGC GACATCGGCG AGGATGCCCG TAACGGGCGC
ATCTATATGC CGCTGTCGTG GATGCGCGAA GCTGGCCTCG ATCCGGAGAC CTGGCTCGCC
AATCCGAAGT TCACGCCGGA GATCGCCAGC ATCGTCAAGC GGCTGATCGA CACTGCGGAT
GCGCTGTACG ATCGCGCGAC GCTCGGCATC GCCAACCTGC CGCGCTCCTG CCGTCCCGGC
ATTTTCGCAG CGCGCGCGCT GTACGCCGAG ATCGGCCGCG AGGTCGAGCG CTCCGGCCTC
GACTCGGTGT CGAGCCGTGC AGTGGTCTCA ACCGGCCGCA AGCTCGCCGT GCTGGCGCGG
CTGCTGGCGT TCCAGGAAAC CGAATGGGCG CCGGCGAAGT ATCTGCCGGC CAAGTTCGGC
GACATGGAAG AGACCAAGTT TCTGGTCGAC GCGGTGATCG CGCATCCGGT GCGCGAACTG
CCGGCGCGCC AGAAGGTCAA GCCGATTGAG CAGAAGGTCG CCTGGCTGGT CGACCTGTTC
ACCCGCCTCG AACGCCGCGA CCAGATGCTG CAACGCAGCC GGGTGTAG
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| Protein sequence | MSLQSDMLAQ SDMLACREMI KEGSHTFHAA SKVLPRRISD PAIALYAFCR VADDAVDLGL
DRAAAVEVLK DRLDRACRGV PRAYPSDRAF ADVVARFSIP PAIPEALIEG LEWDAQGRRF
ETLSDLYSYC ARVAGTVGVM MTLVMGQRKP DIVARACDLG CAMQLTNIAR DIGEDARNGR
IYMPLSWMRE AGLDPETWLA NPKFTPEIAS IVKRLIDTAD ALYDRATLGI ANLPRSCRPG
IFAARALYAE IGREVERSGL DSVSSRAVVS TGRKLAVLAR LLAFQETEWA PAKYLPAKFG
DMEETKFLVD AVIAHPVREL PARQKVKPIE QKVAWLVDLF TRLERRDQML QRSRV
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