| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1660 |
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| Symbol | |
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| ID | 6409317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1779123 |
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| End bp | 1780742 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642711548 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_001990663 |
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| Protein GI | 192290058 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.40005 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGTC GTGATTTCCT CAAGTCCGCT ACAGCCCTCG CCGCCGGCGC GATGGTGCCA
GCACCGGCGA TTTGGTCGGC CGCCAAGGCC GACGCCCGGT CCGAAACCCT GCTGGTTGTC
TCCGAGAGCG GCCCGAACAA CCTCGACATC CACGGCGTCG GCACCAACGT GCCCGGCTAC
GAGGTGTCGT GGAATTGCTA CGACCGGCTG ATCACCCACG AAATGAAGGA AGGCCCCGGC
GGCGTTCCCT ACTACGATAA GGACAAGTTC AAGGGCGAGC TCGCCGACGA CATGGTCATC
GGCGACATGT CTGCGACCTT CAAGCTGAAG AAGAACGCCA CCTTCCAGGA CGGCACCCCG
GTCACCGCCA AGGACGTGAA GTGGTCGCTC GACCGCTCGG TCAGCGTCGG CGGCTTTCCG
ACCTTCCAGA TGAGCGCCGG CTCGCTGACC AAGCCCGAAC AGTTCGTGGT GGTCGACGAT
CACACCGTGC GGGTCGACTT CCTGAAGAAG GACAAGCTCA CGATCCCGGA TCTCGCGGTG
ATTGTGCCCT GCGTCGTCAA TTCCGAACTG GTGAAGAAGA ACGCGACCGA AAAAGACCCG
TGGGGTCTCG AATACACCAA GCAGAACACA GCCGGTTCCG GCGCCTATCG GGTGGTGAAG
TGGACCGCCG GCACCGAAGT GATCATGGAG CGCAACGACA AGTGGGTCGG CGGCCCGCTG
CCGAAAATCA AGCGCGTGAT CTGGCGCATG GTGCCGCAGG CCGGCAACCG CCGGGCACTG
CTGGAGCGCG GTGACGCCGA CATCTCCTAT GAGCTGCCGA ACCAGGACTT CGCCGAGATG
AAGCGCGACG GCAAAGTCAA CGTGGTGTCG TTGCCGATCT CCAACGGCAT CCAGTATCTC
GGCATGAACG TCACCCAGCC GCCGTTCAAC AACCCGAAGG TGCGTGAGGC GGTCGCCTAC
GCGGTGCCAT ATCAGAAGAT CATCGACGCG GTGATGTTCG GCCTCGCCAA CCCGATGTTC
GGCGCGGCGG CCGACAAGGC GACCGAAGTG AAGTGGCCGC AGCCGACCAA GTACAATACC
GACATGGCGA AGGCCAAGGC GCTGATGGCA GAAGCCGGCT ACGCGAACGG CTTCGACACC
ACGCTGTCGT TCGACCTCGG CTTCGCCGGC GTCAACGAGC CGATGTGCAT CCTGATCCAG
GAAAGCCTGG CGCAGATCGG CATCCGCTGC ACCATCAACA AGATCCCCGG CGCCAACTGG
CGCACCGAGC TGAACAAGAA GGTGATGCCG CTCTACGTCA ACATCTTCTC GGGCTGGCTC
GATTATCCGG AGTACTTCTT CTACTGGTGC TACCACTCCG GCAAGTCGAT CTTCAACACC
ATGGGCTACG ACTCGCCCGA GATGGACAGG CTGATCGACA GCTCCCGCAT CGCCGCAGCA
ACCGGCGAAA CCGCGACCTA CGACAGCGAC GTCAAGGGCT TCGTCGACCT CGCCTTCAAG
GACATCCCGC GCGTCCCACT GTACCAGCCC TACCTCAACG TCGCGATGCA GAAGAACGTC
TCCGGCTTCG CCTACTGGTT CCACCGCCGG CTCGACTACC GGACGATGGT GAAGGGCTGA
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| Protein sequence | MKRRDFLKSA TALAAGAMVP APAIWSAAKA DARSETLLVV SESGPNNLDI HGVGTNVPGY
EVSWNCYDRL ITHEMKEGPG GVPYYDKDKF KGELADDMVI GDMSATFKLK KNATFQDGTP
VTAKDVKWSL DRSVSVGGFP TFQMSAGSLT KPEQFVVVDD HTVRVDFLKK DKLTIPDLAV
IVPCVVNSEL VKKNATEKDP WGLEYTKQNT AGSGAYRVVK WTAGTEVIME RNDKWVGGPL
PKIKRVIWRM VPQAGNRRAL LERGDADISY ELPNQDFAEM KRDGKVNVVS LPISNGIQYL
GMNVTQPPFN NPKVREAVAY AVPYQKIIDA VMFGLANPMF GAAADKATEV KWPQPTKYNT
DMAKAKALMA EAGYANGFDT TLSFDLGFAG VNEPMCILIQ ESLAQIGIRC TINKIPGANW
RTELNKKVMP LYVNIFSGWL DYPEYFFYWC YHSGKSIFNT MGYDSPEMDR LIDSSRIAAA
TGETATYDSD VKGFVDLAFK DIPRVPLYQP YLNVAMQKNV SGFAYWFHRR LDYRTMVKG
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