| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1656 |
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| Symbol | |
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| ID | 6409313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1775020 |
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| End bp | 1776861 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642711545 |
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| Product | ABC transporter related |
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| Protein accession | YP_001990660 |
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| Protein GI | 192290055 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.211709 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACCC AGCCCCTGCT CGACGTCCGT GATCTCACGG TCGAATTCGT CACCCGGCGC
GGCATCGTCA AGGCGGTGCA GCATGTCGAT ATCAGCGTCG GCAAAGGCGA GACACTGGCT
ATCGTCGGCG AATCCGGCTC CGGCAAATCG GTGACCTCCT ACGCGGTGAT GCGGATCCTC
GACCGCGCCG GACGGATCGC CGAAGGCTCG GTGATGTTCG GCGGCATGGA TCTGAAGGCC
GCCAGCGAGC ACGAGATGCG CGACCTGCGC GGCCGCGAAA TCTCGATGAT CTTCCAGAAC
CCGCGCGCCG CACTCAACCC GATCCGCAAA GTCGGCGACC AAATCGAAGA CGTGCTGCGC
CAGCATGTGC AATCGACCTC CGCCGATCGC GGCGAGAAGG CGATCGCGGC GCTGGAGGCG
GTGAAGATCG CGCGGCCGCG CGAGCGCTAT CACGCCTATC CGTTCCAGCT CTCCGGCGGC
ATGTGCCAGC GCGTGGTGAT CGCGCTGGCG CTCGCCTGCA ATCCGCAGCT CCTGATCGCC
GACGAGCCGA CCACCGGCCT CGACGTCACC ACGCAGAAGG CGGTGATGGA TCTGATCGTC
GAATTGACCA AGAGCCGTGG GCTGTCGACC ATCCTGATCA CCCACGACCT CGGCCTTGCG
GCCGCCTATT GCGATCGCGT GGTGGTGATG GAGAAGGGCC GCGTGGTCGA GACCGCCTCC
GCGGCCGATA TCTTCGCCAA TCCGCAGCAC CCCTACACCA AGAAACTGAT GCGCGCGACG
CCGCGGCTCG GCGTTGGTCT GCGCGAGCTG CTGCCGGAGG GTGAGCGAGG GACGACGCCC
GCACAAGGCA CGGCGCAGAC TGCTTCCCGC GCGCGGGGAA AGGTCGGATC AGCGCATAGC
GATGATCCGG GTGAGGAGGC GTCTCCAGGA GTCGGAGTGC TCGGCCCCGC GGAAGCGGCC
CCTCACCCCA CCCCTCTCCC CGCACGCGGG GAGAGGGAGC AGGCCTCCCC CCTCCTCTCC
GTCGAAAAGC TGGTGAAGGA GTATCCGCGC CAGGGCGCCA CCGCGACGCT GAGCCGATTG
TTCTCGCGCG GGCCGGCGCC GGAGCCGGAG GTGTTTCGCG CGGTCGATGG CATCAGCTTC
CAGATCGGGC ATGGTGAAAG CGTCGGGCTG GTCGGCGAGT CCGGCTGCGG CAAGTCGACC
ACCTCGATGA TGCTGATGCG GCTGCTCGAT CAGACCTCTG GCCGCATCGT GTTCGACGGC
GAGGAGATCG GCACTATCCT GCCGCACCGC TTCGCGCGGC TGCCGCTGCG CAAGTCGATC
CAGATGGTGT TTCAGGACCC GACCGACAGC CTCAATCCGC GCTTCACCGC GGCGCGCGCG
ATCGCCGACC CGATCCTACA GCTTGGCGAG ATCAAGGGCC GCGACGCGGT GCGCGTGCGC
TGCGAGGAAC TGGCCGAGCA GGTCGGCCTG CCGCTCGATC TGCTCGACCG GTTTCCGCAT
CAGCTCTCCG GCGGCCAGAA GGCGCGAGTC GGCATCGCCC GCGCGATCGC GCTGGGGCCG
AAGCTGGTGA TCCTCGACGA GCCGACCGCA GCGCTGGACG TCTCGGTGCA GGCGGTGGTG
CTGAACCTGC TGCAGGACCT CAAGCAATCG ATGGGGATGA GCTACCTGTT CGTGTCGCAC
GACCTCAACG TGGTGCGGCT GCTGTGCGAC CGCGTCATCG TGATGCGCGC TGGAAAGATC
GTCGAGCAGG GTCCCTCCGA GCAGGTGCTC GGCAGCCCGA AGCACGACTA CACCCGCGAA
CTCCTCACCG CCATCCCGCA TCCGCCGCTC CCGGTGACAT GA
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| Protein sequence | MTTQPLLDVR DLTVEFVTRR GIVKAVQHVD ISVGKGETLA IVGESGSGKS VTSYAVMRIL
DRAGRIAEGS VMFGGMDLKA ASEHEMRDLR GREISMIFQN PRAALNPIRK VGDQIEDVLR
QHVQSTSADR GEKAIAALEA VKIARPRERY HAYPFQLSGG MCQRVVIALA LACNPQLLIA
DEPTTGLDVT TQKAVMDLIV ELTKSRGLST ILITHDLGLA AAYCDRVVVM EKGRVVETAS
AADIFANPQH PYTKKLMRAT PRLGVGLREL LPEGERGTTP AQGTAQTASR ARGKVGSAHS
DDPGEEASPG VGVLGPAEAA PHPTPLPARG EREQASPLLS VEKLVKEYPR QGATATLSRL
FSRGPAPEPE VFRAVDGISF QIGHGESVGL VGESGCGKST TSMMLMRLLD QTSGRIVFDG
EEIGTILPHR FARLPLRKSI QMVFQDPTDS LNPRFTAARA IADPILQLGE IKGRDAVRVR
CEELAEQVGL PLDLLDRFPH QLSGGQKARV GIARAIALGP KLVILDEPTA ALDVSVQAVV
LNLLQDLKQS MGMSYLFVSH DLNVVRLLCD RVIVMRAGKI VEQGPSEQVL GSPKHDYTRE
LLTAIPHPPL PVT
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