| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1604 |
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| Symbol | |
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| ID | 6409261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1717605 |
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| End bp | 1718999 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711493 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_001990608 |
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| Protein GI | 192290003 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.344035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAAGC TGCGCTCACC CTCACTGCTG TTTCTGATCG GACTCTGTCT CGCGTCGCCT
GCCGCGGCTG ACGAGCGATC GCCGCTGTAC TACCGCGATC CATCCGGCGC GCCGCGCTGG
TCGGCGGTGC CGAAGGCCGA TGCGCAAGGC CGCGCTTATC TGCCGGTGTA TGAGGCCGAC
GAGCCCTCTG CGCAGCCGGC GCCGAAGCCC GCGGCCGATC CCGCCCGCAA GATCCTGTAC
TACCGCAATC CGATGGGGCT GCCCGACATC TCGAAGGTGC CGAAGAAGGA CTCGATGGGG
ATGGACTACG TCCCCGTCTA TGAGGGCGAG GACAGTGCGG ACGGCACGGT GAAGCTGTCG
CCCGGCAAGA TCCAGCGCAG CGGCGTCAAA TCCGAGCCCG CCGAACGCCG CGCCCTGCAT
GTGATGGTGA AGGCGCCGGG CGTGATCCAG CTCGACGAGC GCCGCGTCTC GGTGATCGCG
ATGCGCAGCG AAAGCTTCGT CGAGAAGATC GCCGACGTCA CCACCGGCAG CGTCGTCAAA
GCCGGGCAGC CGCTGATGCA GATCTACAGC TCGGCGATCG CCTCGGCCGC CGCCGAGTAT
CTGTCGACGA TCACCTCGAA GAATAGCAGC ACGATCGAAG CCTTCGGCCG CGGCTCGCGG
CAGCGACTGG TCAATCTCGA CGTACCCGAC GAGACCATCG CCGAATTGGA GCGGACGCGG
ACCGCGCCGG TGACGGTGCA ATGGCGCGCG CCGCGCGACG GCATTGTGCT GGAGCGCAAC
GCGATCGACG GCATGCGCGC CAATGTCGGT GACGTGCTGT TCCGGATCGC CGACATCTCG
ACGGTGTGGG CCCTCGTCGA CGTCGCCGAA CGCGATCTCG GCACACTCTC GGTGGGTCAG
AAGGTGACGA TCCGAGCCCG AGCCTTCCCT GATCGCGCGC GCTCTGGAAC GATCGCGGTG
ATCTATCCGC AGGTCAATCG CGATACGCGC ACTACGCGGC TACGCGTCGA ACTCGCCAAT
CCGGATCTGA AGCTGTTGCC GGACATGTAT GTCGATGCCG AGATCGACAT CGCCGGCGAT
GCACCGGTGC TGACGATTCC AACCTCCGCC GTGCTCGACA ACGGCAGCCG GCGCATCGTG
CTGGTGGACA AGGGCGACGG CCGGTTCGAG CCGCGGACGG TGACACTCGG ACGCCGCGGC
GACGGCGTCG TCGAGGTCAA ACACGGCATC GACGAAGGCG AGGCGGTGGT CACCTCCGCC
AACTTCCTGA TCGACGCCGA GAGCAATCTG AAGGCCGCGC TAAAGGGCTT TGCCGACGGA
GCGAACGCCC CCAGCAACGA GCCGCAAGCT TCGTCGCACA ATCACGCACA CGACCACGCC
GGAGCCCAGC CATGA
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| Protein sequence | MTKLRSPSLL FLIGLCLASP AAADERSPLY YRDPSGAPRW SAVPKADAQG RAYLPVYEAD
EPSAQPAPKP AADPARKILY YRNPMGLPDI SKVPKKDSMG MDYVPVYEGE DSADGTVKLS
PGKIQRSGVK SEPAERRALH VMVKAPGVIQ LDERRVSVIA MRSESFVEKI ADVTTGSVVK
AGQPLMQIYS SAIASAAAEY LSTITSKNSS TIEAFGRGSR QRLVNLDVPD ETIAELERTR
TAPVTVQWRA PRDGIVLERN AIDGMRANVG DVLFRIADIS TVWALVDVAE RDLGTLSVGQ
KVTIRARAFP DRARSGTIAV IYPQVNRDTR TTRLRVELAN PDLKLLPDMY VDAEIDIAGD
APVLTIPTSA VLDNGSRRIV LVDKGDGRFE PRTVTLGRRG DGVVEVKHGI DEGEAVVTSA
NFLIDAESNL KAALKGFADG ANAPSNEPQA SSHNHAHDHA GAQP
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