| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1597 |
|---|
| Symbol | |
|---|
| ID | 6409254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1708885 |
|---|
| End bp | 1709745 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642711486 |
|---|
| Product | 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase |
|---|
| Protein accession | YP_001990601 |
|---|
| Protein GI | 192289996 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2030] Acyl dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATCG ACCCTGCGCG CTTGCGCAAC TGGCCCATTC CTGACATCGA GCAGAGCTAC
ACCGAACGCG ACACCATGTT GTACGCGCTC GGCGTCGGTT ATGGCGACGC CCCGCTCGAC
TCGAAGCAGC TGCTTTACGT CTACGAACAG AATTTGCAAG TGCTGCCGTC GATGTCAGTG
GTGCTCGGCT ATCCGGGATT CTGGCTCGGC AATGAAGAGA CCGGCGTCGA CTGGCGCAAG
GTTTTGCACG GCGAGCAGGG CTTCGAGATC TTCAAGCCGC TGCCGCCGAA GGCCACAGTG
ATCGGCCGTT CGCGCGTCAC CGGTCTATTC GACAAGGGCG CCGGCAAGGG TGCGGTGCTG
CTGTCGGAGC GCGATGTCGT CGAGAAGGCG ACTGGCGAAC TCCTGTGCCG CCTGACCTCG
ACCACGATGC TGCGCGGCGA CGGTGGATTT GGCGGCCCCT CGGGGCCGTT GCCTGTGCCG
CACGCGCTGC CGGAGCGTGC GGCCGATCTG TCGCTGCGGA TCGCAACCTC GCCACGCGCC
GCGCTGCTGT ATCGGCTGTC CGGCGACTAC AATCCACTGC ATGCCGATCC CGAGGTAGCG
CGTAAGGGCG GCTTCGACAA ACCGATTCTG CATGGGCTGT GCAGTTTCGG CGTGGTGTGC
CGCGCGCTGG TCGAGCTGTG CTGCGACGGC GATCCGACAC GTCTGACTAA GATGCAGGCC
CGATTCTCGT CTCCGGTGTA TCCCGGCGAA ACCATCGTCA CCGAAGTGTG GAACGATGCA
GAAGGGCGAG TTTCGTTCCG CGCCAAAGTG GCCGAACGGG ATGTCGTTGT GATCAACAAC
GGTCTCGCCG CTGTCTCGTG A
|
|---|
| Protein sequence | MPIDPARLRN WPIPDIEQSY TERDTMLYAL GVGYGDAPLD SKQLLYVYEQ NLQVLPSMSV
VLGYPGFWLG NEETGVDWRK VLHGEQGFEI FKPLPPKATV IGRSRVTGLF DKGAGKGAVL
LSERDVVEKA TGELLCRLTS TTMLRGDGGF GGPSGPLPVP HALPERAADL SLRIATSPRA
ALLYRLSGDY NPLHADPEVA RKGGFDKPIL HGLCSFGVVC RALVELCCDG DPTRLTKMQA
RFSSPVYPGE TIVTEVWNDA EGRVSFRAKV AERDVVVINN GLAAVS
|
|---|
| |