| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1588 |
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| Symbol | |
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| ID | 6409245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1697048 |
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| End bp | 1700596 |
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| Gene Length | 3549 bp |
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| Protein Length | 1182 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642711477 |
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| Product | urea carboxylase |
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| Protein accession | YP_001990592 |
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| Protein GI | 192289987 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1038] Pyruvate carboxylase
[COG2049] Allophanate hydrolase subunit 1
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | [TIGR00724] biotin-dependent carboxylase uncharacterized domain
[TIGR02712] urea carboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAGCA AAGTTCTGAT TGCCAACCGC GGCGAAATCG CTGGGCGGAT CGGCCGCACC
TTGCGCCGGA TGGGGATCGC ATCGGTCGCG ATCTATTCGG ACGCCGACCG GTTTACCCGC
CCGGTGCGCG AGGCCGACGA AGCGGTGCGT GTCGGCGGCG ACGCCGCCAG CGACAGCTAT
CTCAACGTCG ACGCCGTGAT CGACGCCTGC CTCGCCACCG GCGCGCAGGC GGTGCATCCC
GGCTACGGCT TCCTGTCGGA GAACCGCGGC TTTGCCGAGC GGCTGAAGCA GCACGGCATA
GCCTTCATCG GTCCGCGTCC CGACCATCTC GAGGCGTTCG GCCTGAAGCA CCGCGCCCGC
GAACTGGCGC AAGCCAGCAA CGTTCCGCTG CTGCCCGGCA CCGGGCTGAT CGACAGCATC
GAGGAAGCGC TCGAGGCCGC AGGCCGCATC CGCTTTCCGC TGATGCTGAA GAGCACGGCG
GGCGGCGGCG GCATCGGCAT GCAGCTCTGC CATGACGAAG CGACGCTACG CGAGCGCTTC
GCCACCGTGC AGCGCACCGC CCGCGCCAGC TTCGGCGACG CGCGGGTGTA TCTCGAGCGC
TTCGTCGCCG ATGCCCGGCA TATCGAAGTG CAGATCTTCG GCGACGGCCA GGGCAACGTG
ATCGCGCTCG GCGAACGCGA CTGCTCGCTG CAGAGGCGCA ATCAGAAGGT CGTCGAGGAA
ACCCCGGCAC CCGGCATCTC GGACGAGATG AGGGCGCGGC TGCATCAGGC CGCGGTCGCG
CTCGGCCAGA GCGTCGCCTA CGAATCCGCC GGCACCGTCG AATTCATCTA CGACGTCGCC
CGCGACGAAT TCTATTTCCT CGAGGTCAAC ACCCGCCTTC AGGTCGAGCA TCCGGTCACC
GAAGCGGTGT TCGGGGTCGA TCTGGTCGAA TGGATGGTGC GCCAGGCTGC CGGCGACAGC
CCGCTTGCGA CCTACACGCC GCGTCCGCCG CAAGGCGCGG CGATCGAAGT GCGACTGTAT
GCCGAAAATC CCGGTGCCGG CTTCCGGCCC TCGGCCGGCC GGCTGACCCA GGTGGCGTTT
CCGGATGACG CCCGCATCGA CGGCTGGATC GAGACCGGCG ACGAGGTGAC GCCGTTCTAC
GACCCGATGC TGGCCAAGCT GATCGTCCAT GCGGACGACC GCGACACTGC GATCGACCAG
ATGATCGGCG CGCTGGCCGC CACCACCGTC GCCGGGATCG AGACCAATCT CGATTACTTG
CGCGCGATTG CGGCGTCCGA TCTGTTCCGC AACGGCAAGG TCGCCACCAA GGTGCTGGCG
GATTTCAGCT TCGCGGCGCG CACCATCGAC GTGGTGGCGC CCGGCGCGCA ATCCGGACTG
CAGGAGCTGC CGGGCCGGCT GCATCTGTGG CACGTCGGCG TGCCGCCGAG CGGACCGATG
GACGAGCGCT CGTTCCGCCT CGCCAACCGG ATCGTCGGCA ATCCGGAAAC CACCGCAGCG
TTCGAACTCA CCGTCAGCGG CCCAACGCTG CGCTTCAACG CCGACGCCGT GGTGGCGCTG
TGCGGCGCCG GCATGGCGGC GAAGCTCGAC GGTGTGGCGG TCGGCAATGA CGCGCCTATT
GCGGTGCGCG CCGGCCAGGT GCTGGCGATC GGCAAGATCG AGGGCGCGGG CCAACGTTGT
TACCTCGCCA TCCGCGGCGG TTTCGACGCG CCCGAAGTGT TCGGTTCGCG CGCCGTATTC
ACGCTCGGCG CGTTCGGCGG CCACGCCACT GGCGCTCTGA AGGCCGGCGA CGTGCTGCAT
TTCGGTTCGA TCACGCCGGC CGCGGAGCCG CGTGCGCTGA GTAACGCTGA GCGGCCGGCT
CTGACACGTG CGTGGCAGAT CGGCGTAATC TACGGCCCCC ACGGTGCACC CGATTTCTTT
CGCGACGACG ACATCGCGAC GTTGTTCGCC TCCGACTACG AAGTGCATTT CAACAGCGCG
CGCACCGGTG TGCGGCTGAT CGGACCAAAG CCGCAATGGG CCCGCACCGA CGGCGGAGAA
GCCGGGCTGC ACCCTTCGAA TATCCACGAC AACGCCTATG CGGTCGGCGC GATCGACTTC
ACCGGCGACA TGCCGATCAT CCTCGGTCCC GATGGCCCCA GTCTCGGCGG CTTCGTCTGC
CCGGCCGTGG TGGCGCGCGA CGAATTATGG AAGATCGGCC AGCTCAAGCC GGGCGACAAG
GTTCGCTTTG TGCCGGTGAT GCGCGCCGAT GATCCGGTCG CGGGACCGAC TGTCATTGCG
GCGCCCGCCG AGCTTGGCTC CGCGATCGTC GGCCGGCATG ACGATGGCGA GATCCCGGTG
GTGTATCGCC GCGCTGGCGA CGACAATCTT CTGGTCGAAT ACGGCCCGAT GGAGCTCGAC
ATCGCGCTGC GCCTGCGGGT GCACGTGCTC GCCGAGGCGG TGGATAAGGC GAAGCTTCCC
GGCCTGATCG ACCTCACCCC GGGAATCCGT TCGTTGCAGA TCCACTATGA CAGCACGGTG
ATGCCACGCC GCAAGCTGCT CGACGCACTG GCGAGGATCG AGCGCGAACT GCCCTCGGTC
GAGGCGATGG CGGTGCCGAG CCGCATCATT CATCTGCCGC TGTCGTGGAA CGACCCGCAG
GCGGTGCTGG CGATGCGCAA GTATCAGGAG CTGGTGCGGC CGGATGCGCC GTGGTGTCCG
TCCAACATCG AGTTCATCCG CCGCATCAAC GGCCTTGCCA GCGAGGACGA TGTCAAGCGC
ATCGTGTTCG ACGCCAACTA TCTGGTGCTC GGGCTCGGCG ACGTCTATCT CGGTGCACCG
GTCGCCACCC CGGTCGATCC GCGGCACCGC CTGGTCACCA CCAAGTACAA TCCCGCCCGC
ACCTGGACGC CCGAAAACGC CGTCGGCATC GGCGGCGCCT ATATGTGCAT CTACGGCATG
GAAGGCCCCG GCGGTTATCA GCTGTTCGGC CGCACCATCC AGGTCTGGAA CACCTGGCGC
ACCACCGAAG TGTTCAAGCT CGGCCATCCC TGGCTGCTGC GGTTCTTCGA CCAGATCCGG
TTCTTCCCGG TGACGCCGGA AGAACTGCTC GACGCCCGCG CCGCGTTTCC GCACGGCGGC
TATCCGCTCA AGATCGAAGA GACGACGTTC TCCTACGCCG ACTACAAGGC CTTCCTGGCG
CGCGAAGCCG ACAGCATCGC GACGTTCAAG ACCCGTCAGC AGACCGCCTT CGAGGCCGAG
CGCCAGCGTT GGCGCGACGC CAAGCTCGAC GAGGTGGTGG AGGACGACAC CGCGGCCGCG
CTCGGCTCCG GCGGCGACGT GCCGGACGGC TGCGTCGGCC AGTTCACCGA AGCGCCGGGC
AACGTCTGGA AGCTCACCGT CGAGCCGGGC GAGCATGTCG AGATCGGCCA GACGCTGGCG
GTGATCGAGT CGATGAAGAT GGAGATCGCG ATTCCGGCGA CCGCACGCGG CATCGTCAGA
GCCCTCAACG CCAAGCCGGG CCAGACGCTG CGCGCCGGCG ACCTGATCTG CGCGCTGGAG
GAAGTGTGA
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| Protein sequence | MFSKVLIANR GEIAGRIGRT LRRMGIASVA IYSDADRFTR PVREADEAVR VGGDAASDSY
LNVDAVIDAC LATGAQAVHP GYGFLSENRG FAERLKQHGI AFIGPRPDHL EAFGLKHRAR
ELAQASNVPL LPGTGLIDSI EEALEAAGRI RFPLMLKSTA GGGGIGMQLC HDEATLRERF
ATVQRTARAS FGDARVYLER FVADARHIEV QIFGDGQGNV IALGERDCSL QRRNQKVVEE
TPAPGISDEM RARLHQAAVA LGQSVAYESA GTVEFIYDVA RDEFYFLEVN TRLQVEHPVT
EAVFGVDLVE WMVRQAAGDS PLATYTPRPP QGAAIEVRLY AENPGAGFRP SAGRLTQVAF
PDDARIDGWI ETGDEVTPFY DPMLAKLIVH ADDRDTAIDQ MIGALAATTV AGIETNLDYL
RAIAASDLFR NGKVATKVLA DFSFAARTID VVAPGAQSGL QELPGRLHLW HVGVPPSGPM
DERSFRLANR IVGNPETTAA FELTVSGPTL RFNADAVVAL CGAGMAAKLD GVAVGNDAPI
AVRAGQVLAI GKIEGAGQRC YLAIRGGFDA PEVFGSRAVF TLGAFGGHAT GALKAGDVLH
FGSITPAAEP RALSNAERPA LTRAWQIGVI YGPHGAPDFF RDDDIATLFA SDYEVHFNSA
RTGVRLIGPK PQWARTDGGE AGLHPSNIHD NAYAVGAIDF TGDMPIILGP DGPSLGGFVC
PAVVARDELW KIGQLKPGDK VRFVPVMRAD DPVAGPTVIA APAELGSAIV GRHDDGEIPV
VYRRAGDDNL LVEYGPMELD IALRLRVHVL AEAVDKAKLP GLIDLTPGIR SLQIHYDSTV
MPRRKLLDAL ARIERELPSV EAMAVPSRII HLPLSWNDPQ AVLAMRKYQE LVRPDAPWCP
SNIEFIRRIN GLASEDDVKR IVFDANYLVL GLGDVYLGAP VATPVDPRHR LVTTKYNPAR
TWTPENAVGI GGAYMCIYGM EGPGGYQLFG RTIQVWNTWR TTEVFKLGHP WLLRFFDQIR
FFPVTPEELL DARAAFPHGG YPLKIEETTF SYADYKAFLA READSIATFK TRQQTAFEAE
RQRWRDAKLD EVVEDDTAAA LGSGGDVPDG CVGQFTEAPG NVWKLTVEPG EHVEIGQTLA
VIESMKMEIA IPATARGIVR ALNAKPGQTL RAGDLICALE EV
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