Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1559 |
Symbol | |
ID | 6409216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 1653935 |
End bp | 1655095 |
Gene Length | 1161 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642711453 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_001990568 |
Protein GI | 192289963 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGACCA GCATTCCGCG TGTTGCCGCC AGCCTTGCCG CCATCGGCAT GCTGGCGAGC GTTCTCGCGC CATCGGCTTT CGCCCAGGAG ACGGTGAAGG TCGGCGCCAT CCTCAGCCTC AACGGCCCGG CCGCCCCGTT CGGCATTCCG GAGCGCGACG CGCTGCAAAT TCTCATCGAT CAGTATAACG CCGCCGCCGC GCCGGATGCG CGCAAGATCG AACTTGTGGT GCACGACGAG CAGACCAACC CGACCGAGGC GGCGCGCGGC GCTACCAAAC TGATCCAGCA GGAAAAGGTC CAGGTCATCA TCGGGCCGAC GATCGGATCG AGCGCGCTGG CGATCATGCC GATCGCAGCG GCGGCCAAGA TCCCGGTGAT CTCGCCGGTC GGCTCGATCC CGGTGACGGC CAAGGACAGC GGCTTCTTCC CCTGGGTGTT CCGGACCTGC ACCAACGACG AACTGCTGGT CGCCGGCGCG ATGGAGCTCG GCGTGTTCAA GAACGGCTAC AAGCGCGTCG CGATTATGCA TCAGGAGGAT GCCTACGGTA AGAACTCTGC AGTGTTCGCC ACCAAGCTGG CGCAGGAGAA GGGGGTCGAG GTGATCTCGA CCGCCAGCGC GCCTGGCAAC GCGGTCGACC TCAGCGCCGC GGCGACCAAG CTGCGCAACG CCAATCCGGA TGCGGTGTTG CTGTGGACCT CGTCGCCGGC GATGGGCGCG GCGTTCATGC GCGCCGCCAA GCAAGTTGGC CTCGCGGTGC CGGTGGTCGG CGCCGGCGCG CTGGTGCAGA AGGCGTTCAT CAACGCCGCG GGCGACGCCG CGGAGAACGT CACCATGGTG TCGATCGGCA ACTGGGACGA TCCCTCTCCG AAGCTGAAGA AGCTCGAGAA GCTGCTGGAG GCCAACGGCA AGACTCCGGC GGGCTTCGGC GAATTGCTCA GCGCGGCCTC GGTAACTGTG TTGTTTGACG CACTGAAGCG GGTCGAGGGG CCTGTGACCG GAGAGAAACT GCGTGCGAGC CTCGAGGGTG TCTGCACTGA AAGCGCTTAT CTTGATGGCA AACTTTGCTA TAATGCTAAT GATCATGAAG GTTTCGGCAG GGATTCGCTG AGGGCAGTCA CGGTCAAGGC CGGCCGGTTT CAAAACGTCG CACACAACTG A
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Protein sequence | MKTSIPRVAA SLAAIGMLAS VLAPSAFAQE TVKVGAILSL NGPAAPFGIP ERDALQILID QYNAAAAPDA RKIELVVHDE QTNPTEAARG ATKLIQQEKV QVIIGPTIGS SALAIMPIAA AAKIPVISPV GSIPVTAKDS GFFPWVFRTC TNDELLVAGA MELGVFKNGY KRVAIMHQED AYGKNSAVFA TKLAQEKGVE VISTASAPGN AVDLSAAATK LRNANPDAVL LWTSSPAMGA AFMRAAKQVG LAVPVVGAGA LVQKAFINAA GDAAENVTMV SIGNWDDPSP KLKKLEKLLE ANGKTPAGFG ELLSAASVTV LFDALKRVEG PVTGEKLRAS LEGVCTESAY LDGKLCYNAN DHEGFGRDSL RAVTVKAGRF QNVAHN
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