Gene Rpal_1559 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1559 
Symbol 
ID6409216 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp1653935 
End bp1655095 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content64% 
IMG OID642711453 
ProductExtracellular ligand-binding receptor 
Protein accessionYP_001990568 
Protein GI192289963 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGACCA GCATTCCGCG TGTTGCCGCC AGCCTTGCCG CCATCGGCAT GCTGGCGAGC 
GTTCTCGCGC CATCGGCTTT CGCCCAGGAG ACGGTGAAGG TCGGCGCCAT CCTCAGCCTC
AACGGCCCGG CCGCCCCGTT CGGCATTCCG GAGCGCGACG CGCTGCAAAT TCTCATCGAT
CAGTATAACG CCGCCGCCGC GCCGGATGCG CGCAAGATCG AACTTGTGGT GCACGACGAG
CAGACCAACC CGACCGAGGC GGCGCGCGGC GCTACCAAAC TGATCCAGCA GGAAAAGGTC
CAGGTCATCA TCGGGCCGAC GATCGGATCG AGCGCGCTGG CGATCATGCC GATCGCAGCG
GCGGCCAAGA TCCCGGTGAT CTCGCCGGTC GGCTCGATCC CGGTGACGGC CAAGGACAGC
GGCTTCTTCC CCTGGGTGTT CCGGACCTGC ACCAACGACG AACTGCTGGT CGCCGGCGCG
ATGGAGCTCG GCGTGTTCAA GAACGGCTAC AAGCGCGTCG CGATTATGCA TCAGGAGGAT
GCCTACGGTA AGAACTCTGC AGTGTTCGCC ACCAAGCTGG CGCAGGAGAA GGGGGTCGAG
GTGATCTCGA CCGCCAGCGC GCCTGGCAAC GCGGTCGACC TCAGCGCCGC GGCGACCAAG
CTGCGCAACG CCAATCCGGA TGCGGTGTTG CTGTGGACCT CGTCGCCGGC GATGGGCGCG
GCGTTCATGC GCGCCGCCAA GCAAGTTGGC CTCGCGGTGC CGGTGGTCGG CGCCGGCGCG
CTGGTGCAGA AGGCGTTCAT CAACGCCGCG GGCGACGCCG CGGAGAACGT CACCATGGTG
TCGATCGGCA ACTGGGACGA TCCCTCTCCG AAGCTGAAGA AGCTCGAGAA GCTGCTGGAG
GCCAACGGCA AGACTCCGGC GGGCTTCGGC GAATTGCTCA GCGCGGCCTC GGTAACTGTG
TTGTTTGACG CACTGAAGCG GGTCGAGGGG CCTGTGACCG GAGAGAAACT GCGTGCGAGC
CTCGAGGGTG TCTGCACTGA AAGCGCTTAT CTTGATGGCA AACTTTGCTA TAATGCTAAT
GATCATGAAG GTTTCGGCAG GGATTCGCTG AGGGCAGTCA CGGTCAAGGC CGGCCGGTTT
CAAAACGTCG CACACAACTG A
 
Protein sequence
MKTSIPRVAA SLAAIGMLAS VLAPSAFAQE TVKVGAILSL NGPAAPFGIP ERDALQILID 
QYNAAAAPDA RKIELVVHDE QTNPTEAARG ATKLIQQEKV QVIIGPTIGS SALAIMPIAA
AAKIPVISPV GSIPVTAKDS GFFPWVFRTC TNDELLVAGA MELGVFKNGY KRVAIMHQED
AYGKNSAVFA TKLAQEKGVE VISTASAPGN AVDLSAAATK LRNANPDAVL LWTSSPAMGA
AFMRAAKQVG LAVPVVGAGA LVQKAFINAA GDAAENVTMV SIGNWDDPSP KLKKLEKLLE
ANGKTPAGFG ELLSAASVTV LFDALKRVEG PVTGEKLRAS LEGVCTESAY LDGKLCYNAN
DHEGFGRDSL RAVTVKAGRF QNVAHN