| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1551 |
|---|
| Symbol | |
|---|
| ID | 6409208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1643222 |
|---|
| End bp | 1644346 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642711445 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_001990560 |
|---|
| Protein GI | 192289955 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCTCG AGGCCGACTA TCGCGACTTC CGCGACAACA TCCGCCGCTT CGCGCAAACC
GAACTGGCGC CGCGCGCCGC CGAACTCGAT CGCAGCGGCG AGCCGCCGCA CCAGGTGCAC
CAGGCCGCGG CCAAGCTCGG CATCCCCGGG CTGCCCTATC CGGAGAGCTA CGGCGGAGGC
GGCGCCGACA TCTTCGCGCA ATGCGTCGCG ATGGAGGAGA TGGCGCGTGC CTGCGCGTCG
AGCGCGCTGT CGCTCGGCTC GAGCTGGATC CTGTCGGCGG TGGTCGACTT CGGCAGCAAG
GATCAGCAGG ATCGCATCGT GCCGCAAATG GTCGCCGGCG AGGCGCGCTC GGCATGGGGC
CTGACCGAGC CGAAGGGCGG CTCCGATCTG ATGGCGGCGT CGACCAAGGC GACCCGCACC
GGCGACGGCT GGATCATCAA CGGCGTCAAG CGCTTCATCA CCAATGGCGG CTGGGCCGAC
TGGTACATGG TGTTCGCGCG CACCAGCGAG AAGAGGTTCG GGCTGTTCCT CGTCAACAAG
GCGGATCCCG GCGTGTCGTT CGGCGCGCGG GAAAAGAAAA TGGGCATGCG CGCCAGCCCG
ACCTCCGACG TCATCCTCGA CAACGTCATC GTGCCGGAGT GGCGACTGCT CGGCGACCCG
GAGCGCGGTG CCGAGTACAT CAACAAGGCG CTGTTGAAGT CGCGGATGCA GATGTCGGCA
CACGCGCTCG GCATCGCCGG CGCGGCGCTG ACCGAGGCGC TGCGCTACAC CAAGGAGCGG
GTGCAGTTCG GCCAGCCGGT CGCTGAATTC CAGCTGGTGC GCGGCCTCGT CGCCGACATG
GCGATCAAGG TCGAGGCGGC GCGCGCGACA CTGCGTAGCG CTTGCGAACT CTACATCGGC
GGCGATCCGG CCGCGAAGAC GCAGGCGTCG ATCGCCAAGG TGCTGTGCAG CGACGCGGCG
ATGGCGGTGA CGACCGACGC GGTGCAGCTC CACGGCGGCT ACGGCTACCT GCAGGACTAC
CCGGTCGAAC GGATGATGCG CGACGCCAAG GTCACGCAGA TCTGGGAGGG TACCAACCAG
ATCCACCGGC TGATGATCGC CAAAGACTTC TACGAACGGG TGTGA
|
|---|
| Protein sequence | MTLEADYRDF RDNIRRFAQT ELAPRAAELD RSGEPPHQVH QAAAKLGIPG LPYPESYGGG
GADIFAQCVA MEEMARACAS SALSLGSSWI LSAVVDFGSK DQQDRIVPQM VAGEARSAWG
LTEPKGGSDL MAASTKATRT GDGWIINGVK RFITNGGWAD WYMVFARTSE KRFGLFLVNK
ADPGVSFGAR EKKMGMRASP TSDVILDNVI VPEWRLLGDP ERGAEYINKA LLKSRMQMSA
HALGIAGAAL TEALRYTKER VQFGQPVAEF QLVRGLVADM AIKVEAARAT LRSACELYIG
GDPAAKTQAS IAKVLCSDAA MAVTTDAVQL HGGYGYLQDY PVERMMRDAK VTQIWEGTNQ
IHRLMIAKDF YERV
|
|---|
| |