Gene Rpal_1550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1550 
Symbol 
ID6409207 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp1642044 
End bp1643195 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content71% 
IMG OID642711444 
ProductL-carnitine dehydratase/bile acid-inducible protein F 
Protein accessionYP_001990559 
Protein GI192289954 
COG category[C] Energy production and conversion 
COG ID[COG1804] Predicted acyl-CoA transferases/carnitine dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCGGCC TGAAGTTCGG CCCGCTCGCG GGCGTTCGCG TGCTCGACAT GTCGCGGCTG 
GCGCCGGGGC CGTACGCGAC GATGCTGCTG GGCGACCTCG GCGCCGACGT CATCGTCGTC
ACCGGCGGCC GCGGCGGCGC GCCGGCGGAA TGTTTCGCCC GCGGCAAGCG CTTCGTCGCG
CTCGATCTGA AGGCCGCTGA GGGCCGTACC GCCTTACACA AGCTCGCGGC CGAAGCCGAC
GTGTTCGTCG AGAGCTTCCG TCCCGGCGTC GCCGACCGGC TCGGCGCGGG CTACGCCGAG
CTGTCGTCGC TCAATCCGCG GCTGGTCTAT TGCGCGCTCA CCGGCTACGG CCAGGACGGG
CCTCTGGCGC AGGAGGCCGG CCACGACCTC AACTATCTGG CGGTCACCGG CGTGCTCGGC
GCGATCGGGC CGCACGATCG TCCGCCGACC GCGCCGCTCA ACCTGATCGC CGACTTCGCC
AGCGGTAGCT TCAATGCCGT GATCGGCGTG CTCGCTGCGC TGTACGAGCG CGAGCGCTCG
GGCAAAGGGC AATTCGTTGA CGCGGCGATG ATTGACGGCT GCATGTCGCT GATGGGGATG
TTCGCCTCGG TGTGGGGGCA GGACGTGCTG CCGTCGCGCG GCCGCGGCTG GATCAGCGGC
GAGGCGCCAT ACTATCGCTG CTACGAATGC GCGGACGGCA GGTACATCGC CATCGGCGCA
CTGGAGCCGC AGTTCTTCGC GGCGCTATGG GCCGACCTCG GCGGCGGGGC CCCGCCGGAT
CAGTTCGACC TCACACAGTG GCCGGCGATC GAGCAGCGGT TCGCGGACAC GTTCCGCACG
GCGCCGCGCG ACCATTGGGC GGCGCGTTAC GCCGGACGCG ACGTTTGCGT GTCGCCGGTG
CTGAGCCCCG ACGAAGTGTG GGCGCAGCCG CACATCAAGC ATCGATTCCC GGACGCCTCA
CCGGACGTGG CGCCGTCGTT TCCGCGGTTC GGCCGTACCG AGATCGCGCC GTCGCCGTGC
GACCAGCGCG ATCAGTCGGA CGCGATCCTC GCCGGGGCGG GGGTCACCGC CGCCGACATT
GCCCGCGCCA GCCCGGAGGC CGAACGCCGC CGCAAGGGCT GGAGCGAGTG GCCGCCCGTT
TTCAAACACT GA
 
Protein sequence
MSGLKFGPLA GVRVLDMSRL APGPYATMLL GDLGADVIVV TGGRGGAPAE CFARGKRFVA 
LDLKAAEGRT ALHKLAAEAD VFVESFRPGV ADRLGAGYAE LSSLNPRLVY CALTGYGQDG
PLAQEAGHDL NYLAVTGVLG AIGPHDRPPT APLNLIADFA SGSFNAVIGV LAALYERERS
GKGQFVDAAM IDGCMSLMGM FASVWGQDVL PSRGRGWISG EAPYYRCYEC ADGRYIAIGA
LEPQFFAALW ADLGGGAPPD QFDLTQWPAI EQRFADTFRT APRDHWAARY AGRDVCVSPV
LSPDEVWAQP HIKHRFPDAS PDVAPSFPRF GRTEIAPSPC DQRDQSDAIL AGAGVTAADI
ARASPEAERR RKGWSEWPPV FKH