Gene Rpal_1543 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1543 
Symbol 
ID6409200 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp1628986 
End bp1629888 
Gene Length903 bp 
Protein Length300 aa 
Translation table11 
GC content61% 
IMG OID642711437 
Producttranscriptional regulator, AraC family 
Protein accessionYP_001990552 
Protein GI192289947 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCAAAC TGGAGGCGTT CGGGGATCGA AAGTTTCCAG CCGCCGAGCT TATTCTAAGC 
TCCGAAGGAC GAGGCTGGGA CGGCCTCGGC ACCCAGGTTC GGCGCCATCC CGCCGGCGAG
ATCCCGGTGC CGATTCCCGA CCAGATGGAG GTCACCCTCG CAATCGCCGG CTCACAGACT
GGGCGCGTGG AGCGTCGCTC CGGTAGCGCG TTTCAGAATA CGACGGCGCG ACCGGGCACG
CTGTGGTTCT GTCCCATTGG CGTCACCGAG GATTCGATCC GGATCACCGA AACGCTGCCT
GTGGTGCAGC ACGTCTTCCT TGCAAAGTCG CAGTTCGACA GTCTTTCCGA GCTGAGTTCG
AGATCGCTGT CGCCTGCGAG CATCGCCTAT CTAGCGGACG TCAACGACGA GTTGGTCCGC
CAGATCTGCC AGCGGATCTA TCGGGAGGCG CAGGAAGAAA CCAGCAGCGG CAAGATCCTG
ATCGACTGCC TCGCCCAGTC CCTGGTGGCG CATCTCGTTT CCGACTATTC CCACGACAGC
CGTATCCACC TCAGCCCCGA CAGCGGACCA TCGAAGCTCG ACGACGCGAG GCTGCGCCGG
GTGCTGGACT ACATTTACGA CAACATCGAC CAGGATCTGT CTCTGTCGAA GCTGTCGGAC
GTCGCCTGCC TCAGCAAACA TCATTTCGCA CGGGCGTTCC GGGAAGCGAC GGGAACGCCG
CCCTACCGCT TCATCAGTGA GCGAAGACTT GATCACGCGC TGAACCTGCT CAAAGACGGC
CAACTGAGCT TGGCGGAAAT CGCCTACATC TGCCGGTTCT CCTCACAGGC AACTTTCACC
CGGGCGTTTC GGCGCCATGT CGGCACCTCG CCAGGTGAAT ATCGACATCT GTCCCGCACC
TGA
 
Protein sequence
MTKLEAFGDR KFPAAELILS SEGRGWDGLG TQVRRHPAGE IPVPIPDQME VTLAIAGSQT 
GRVERRSGSA FQNTTARPGT LWFCPIGVTE DSIRITETLP VVQHVFLAKS QFDSLSELSS
RSLSPASIAY LADVNDELVR QICQRIYREA QEETSSGKIL IDCLAQSLVA HLVSDYSHDS
RIHLSPDSGP SKLDDARLRR VLDYIYDNID QDLSLSKLSD VACLSKHHFA RAFREATGTP
PYRFISERRL DHALNLLKDG QLSLAEIAYI CRFSSQATFT RAFRRHVGTS PGEYRHLSRT