Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1543 |
Symbol | |
ID | 6409200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 1628986 |
End bp | 1629888 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642711437 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_001990552 |
Protein GI | 192289947 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCAAAC TGGAGGCGTT CGGGGATCGA AAGTTTCCAG CCGCCGAGCT TATTCTAAGC TCCGAAGGAC GAGGCTGGGA CGGCCTCGGC ACCCAGGTTC GGCGCCATCC CGCCGGCGAG ATCCCGGTGC CGATTCCCGA CCAGATGGAG GTCACCCTCG CAATCGCCGG CTCACAGACT GGGCGCGTGG AGCGTCGCTC CGGTAGCGCG TTTCAGAATA CGACGGCGCG ACCGGGCACG CTGTGGTTCT GTCCCATTGG CGTCACCGAG GATTCGATCC GGATCACCGA AACGCTGCCT GTGGTGCAGC ACGTCTTCCT TGCAAAGTCG CAGTTCGACA GTCTTTCCGA GCTGAGTTCG AGATCGCTGT CGCCTGCGAG CATCGCCTAT CTAGCGGACG TCAACGACGA GTTGGTCCGC CAGATCTGCC AGCGGATCTA TCGGGAGGCG CAGGAAGAAA CCAGCAGCGG CAAGATCCTG ATCGACTGCC TCGCCCAGTC CCTGGTGGCG CATCTCGTTT CCGACTATTC CCACGACAGC CGTATCCACC TCAGCCCCGA CAGCGGACCA TCGAAGCTCG ACGACGCGAG GCTGCGCCGG GTGCTGGACT ACATTTACGA CAACATCGAC CAGGATCTGT CTCTGTCGAA GCTGTCGGAC GTCGCCTGCC TCAGCAAACA TCATTTCGCA CGGGCGTTCC GGGAAGCGAC GGGAACGCCG CCCTACCGCT TCATCAGTGA GCGAAGACTT GATCACGCGC TGAACCTGCT CAAAGACGGC CAACTGAGCT TGGCGGAAAT CGCCTACATC TGCCGGTTCT CCTCACAGGC AACTTTCACC CGGGCGTTTC GGCGCCATGT CGGCACCTCG CCAGGTGAAT ATCGACATCT GTCCCGCACC TGA
|
Protein sequence | MTKLEAFGDR KFPAAELILS SEGRGWDGLG TQVRRHPAGE IPVPIPDQME VTLAIAGSQT GRVERRSGSA FQNTTARPGT LWFCPIGVTE DSIRITETLP VVQHVFLAKS QFDSLSELSS RSLSPASIAY LADVNDELVR QICQRIYREA QEETSSGKIL IDCLAQSLVA HLVSDYSHDS RIHLSPDSGP SKLDDARLRR VLDYIYDNID QDLSLSKLSD VACLSKHHFA RAFREATGTP PYRFISERRL DHALNLLKDG QLSLAEIAYI CRFSSQATFT RAFRRHVGTS PGEYRHLSRT
|
| |