| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1542 |
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| Symbol | |
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| ID | 6409199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1628009 |
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| End bp | 1628950 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642711436 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001990551 |
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| Protein GI | 192289946 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGGCG TTGATACTCC TGCAGCACGC CGGCTGCCGG TCGGGACGGT GCTCTCGGTC
CTGGTCACGC TCGCCGCAGT CGCTGCAGCG GCCTATCTGG GCCGGATGAT GTGGCAGGCC
TATATGGCCG CGCCGTGGAC GCGTGACGGC ACGGTGCGGG CCTATGTGGT CGGCGTGACG
CCACAGGTGT CGGGCCGCAT TTCGGAGCTC GCCGTCAAGG CGGCGCAGTA CGTCCGCAAG
GGCGATCCGC TGATGAAAAT CGATCCGGTC GATTTCCAGA TCGCGCTGGC GAGCGCGGAA
GCGACCGTCG CCAGCGCCAG GGCGGACCTC GCCAACAAGC AGGCGGAAGC CGAGCGGCGC
GACCGTCTCT CGTCCCTCGC GGTCTCCAAG GAGGAGCAGC AGATCTATGC GGCCGCGGCC
GACATAGCGG CTGCGGCCTT GCGTCAGGCG CTCAGCAACC TCGACAAGGC GCGGCTGGCA
CTCAGCCGTA CAGAGATCGT TTCGCCGGTC GACGGTTATG TCACCAATCT AGTCACCCAG
GCCGGCGACT ACGCCACCGG CGGCCAGCGC GCGTTGTCGA TCGTCGACAG CGGTAGTTTC
TGGGTGGATG CGTATTTCGA GGAAACCTTG CTTCGCGGCA TTCGCGTCGG CGACCGGGCG
CGGGTCGCGC TGATGGCGTA TCCGCAGACA CTCGCGGGCG AAGTCGTCGG AATCGAACGG
GGTATCGCGG TGCCCAACGC AGAGTCCGAT CCGTCTGGAC TCGCCACGGT CAATCCGGTG
TTCACCTGGG TGCGGCTGGC GCAGCGCGTC CCGGTCCGGA TCGCGTTAAA GAAGGTACCA
CCGTCGATCG TGCTTGCTGC GGGCCTCACG GCGACGGTGT CGATCCTGCC GAACAGCGCT
CCAGCCGGCG CGAAGCCAAT CGTGCCGCCG CCAGCGGAGT AG
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| Protein sequence | MTGVDTPAAR RLPVGTVLSV LVTLAAVAAA AYLGRMMWQA YMAAPWTRDG TVRAYVVGVT
PQVSGRISEL AVKAAQYVRK GDPLMKIDPV DFQIALASAE ATVASARADL ANKQAEAERR
DRLSSLAVSK EEQQIYAAAA DIAAAALRQA LSNLDKARLA LSRTEIVSPV DGYVTNLVTQ
AGDYATGGQR ALSIVDSGSF WVDAYFEETL LRGIRVGDRA RVALMAYPQT LAGEVVGIER
GIAVPNAESD PSGLATVNPV FTWVRLAQRV PVRIALKKVP PSIVLAAGLT ATVSILPNSA
PAGAKPIVPP PAE
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