Gene Rpal_1493 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1493 
Symbol 
ID6409150 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp1575446 
End bp1576264 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content67% 
IMG OID642711390 
Productlytic murein transglycosylase 
Protein accessionYP_001990506 
Protein GI192289901 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2951] Membrane-bound lytic murein transglycosylase B 
TIGRFAM ID[TIGR02283] lytic murein transglycosylase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGAAGC TGCGCCTTGC TCTCGTCACC TGCGCCCTCG GCGGCGCGCT GCTGTCCACT 
GCGCCGGCTG AGGCCGCCCG CTGCGGCGGC GACTTCAACA GCTTCATCGC CAGCTTTTCC
GCTGACGCAG CCCAGGCCGG AATTTCACAG GGCGTGATCT CGCAGGCGCT CGGCGGCGTC
ACCGAGGACC CCGGCGTGCT GGCGTTCGAC CGCCGCCAGC GCGGCACCTT CAACAAGAGC
TTTGAGCAAT ATGTTTCGAC GCGGGTCGGC GCCGGCCGCA TCAAGGCCGG CCGCGCGATG
CTGATGCGTC ACGCTTCGCT GCTGTCGCGG ATCGAGCGCC AGTTCGGCGT GCCGCCGCAG
ATCGTGGTGG CGATCTGGGG CCTGGAGACC GATTACGGCA AGGGCGACAT GGGCAAGCTG
CCGGTGTTCC GCGTGCTGGC GACGCTGGCG CATGACTGCC GCCGGACCGA GCTGTTCCAG
GGCGAGCTGC TGGCGGCTCT GCAGATCCTG CAGCGCGGCG ACCTGACGCT GCGCGACATG
GTCGGCGCCT ATGCTGGCGA GATCGGCCAG ACCCAGTTCC TGCCGTCGTC CTACATCAAG
TACGGCGTCG ACTACGACGG CAACGGCCAC GTCGACCTGC GCCACAGCGT GCCGGACGTG
CTGGCCTCGA CCGCCAATCT GCTGAAGAGC GCCGGCTGGA AGGCCGGCGG CTCCTACGAG
GAAGGCTCGG CGAATTTCGA GGCGATGCGC GAGTGGAATC GCGCGCTGGT GTATCGCAAG
ACGATCGCTT ACTTCGCCGA CAAGCTGATC GAGCAGTAA
 
Protein sequence
MLKLRLALVT CALGGALLST APAEAARCGG DFNSFIASFS ADAAQAGISQ GVISQALGGV 
TEDPGVLAFD RRQRGTFNKS FEQYVSTRVG AGRIKAGRAM LMRHASLLSR IERQFGVPPQ
IVVAIWGLET DYGKGDMGKL PVFRVLATLA HDCRRTELFQ GELLAALQIL QRGDLTLRDM
VGAYAGEIGQ TQFLPSSYIK YGVDYDGNGH VDLRHSVPDV LASTANLLKS AGWKAGGSYE
EGSANFEAMR EWNRALVYRK TIAYFADKLI EQ