| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1487 |
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| Symbol | |
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| ID | 6409144 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1569014 |
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| End bp | 1570777 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642711384 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001990500 |
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| Protein GI | 192289895 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0988426 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCGGTC TCTGGAATCA GATTGCCACC AGCCTCAAGA CGCGGTTTCT GGTCGTGACC
GTCTGCGTGT TCGGGCTGGT CGCCGTGCCG GCCTATGTGG CGTTTGAATT CCTGACCCGT
CAGACCGTGG TTGCGCTCGG CACGTTGTTC GCCGAGAAGC AGGTGCTGTT CGACCGCTAC
CGCGGGCTCG AGGCGCTGAT CCGCGAGGTC TCGCTGGCCG AGACGGTCGC CCGGTCGCCG
GCGGTGCGCG CCTGGGCCCG CGACGAGGCC GACCCCGACA AGACGAAGCG CGGGCTGGCC
GAACTCGAGC ACTACCGGCT GTCGTTTCAC GACAAGAGCT ATTTCTTCGT CGTCCACCAG
TCCGGCAACT ACTACTTCAA CGACGCGAAG AACGACTACG ACGGCAACCA GCTCCGCTAT
CAGGTCAAGC GCGACAATCC GCGCGACGGC TGGTACTTCA AGACGATCGC GGCCGGACAG
CCCTGCCAGC TCAATGTCGA TCGCGACGAC AATCTCGCCG TCACCAAAGT CTGGATCAAC
TGCGTCATCG CCGACCAGGG CCGGATTCTC GGCGTGATCG GCACCGGCGT CGACCTCACC
GAATTCATCC GCGAGGTGGT GGCGCTGCCG CAGACCGGCG TCACCAGCAT GTTCGTCGAT
CACGCCGGCG CCATCCAGGC GCATCGCGAT CCGGGGATGG TCGATTTCCA CAGCCTCACC
AAGGACACCA AGACCAAGAA GACGATCTTC CAGCAGGTCG ACAGTCCCGC CGACGCCGCC
GAACTCGCCG CCATGATGAA ACGCGTTTCC GCCGGCCCCG CGGCGGTCGA ATCGCGCTTC
ATGAACATCG GGGGGCGCGA GGTCCTGGTC GGAGTCGGCT ATCTCGACCA GCTGGGCTGG
TTCAACGTGA CGCTGATGGA CATCGACGCC ATCATCGATC GCCGCTTGTT CACCCCGATC
GCGTTGCTGC TGATCGTGAT GATGACGGCG GCGGTCGCGC TCGTCACCAT CCTGTTCCGC
CGGGTCGTGC TCGATCGGCT CGCCACCGTC GAGGCGGCCG CGCGGCGGGT CGAAGACGGC
GACTTCGACC ATATCGTCGT CGACCAAGGC AGCGACGAGA TCGGCCGACT GTCGCGCACC
TTGTCGGGCA TGGCGCACGC CGTGCGCGAC CACACCCGCA TTCTCGAGGA TCTGGTCGAC
GAGCGGACCG AGAAGCTGCG GCGTCTCGCC AATATCGATC TGCTGACCGA GATTCCCAAC
CGTCGGGGCT TCACCCAGGT GTTCGAGCAG TGGCTGGCGC AGTCGCCCTT GGCGCCGCGG
TCGGCCGGGC TGCTGCTGAT CGATCTCGAT GACTTCAAGG ACGTCAACGA TGTGTTCGGC
CATCTGGCCG GCGATCGCCT GCTGTGCGAA ACCGCGCGGC GGCTCGCGCC GCTCCTCACC
GAGCGGGACA CCTGCGCCCG CTGGGGCGGC GACGAGTTCG TCGTGCTGGT CGAGGATCGC
GACGCGGACG GCCTGCGGGA GCTGTGTGCG CGCATGGTCG ACGCGATGAA CGCCGCGCCG
ATCCGCTCCG ACGACGGGCA GGAGATCGCG CTGACGGTCT CTATCGGCGC CTGCCGGGTG
GTCTCGGGCA GCTCGATCGA CGCCGCCTTT GCGGAGGCCG ATGCGGCGCT CTACGCCGCC
AAGCGCGCCG GCCGCAACCG GTTCGTGCTG TTCGACTCTG GCGCCGGGTC GGCGCTCGAC
GCGGTGGCGA CGGCGCCGGC TTGA
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| Protein sequence | MRGLWNQIAT SLKTRFLVVT VCVFGLVAVP AYVAFEFLTR QTVVALGTLF AEKQVLFDRY
RGLEALIREV SLAETVARSP AVRAWARDEA DPDKTKRGLA ELEHYRLSFH DKSYFFVVHQ
SGNYYFNDAK NDYDGNQLRY QVKRDNPRDG WYFKTIAAGQ PCQLNVDRDD NLAVTKVWIN
CVIADQGRIL GVIGTGVDLT EFIREVVALP QTGVTSMFVD HAGAIQAHRD PGMVDFHSLT
KDTKTKKTIF QQVDSPADAA ELAAMMKRVS AGPAAVESRF MNIGGREVLV GVGYLDQLGW
FNVTLMDIDA IIDRRLFTPI ALLLIVMMTA AVALVTILFR RVVLDRLATV EAAARRVEDG
DFDHIVVDQG SDEIGRLSRT LSGMAHAVRD HTRILEDLVD ERTEKLRRLA NIDLLTEIPN
RRGFTQVFEQ WLAQSPLAPR SAGLLLIDLD DFKDVNDVFG HLAGDRLLCE TARRLAPLLT
ERDTCARWGG DEFVVLVEDR DADGLRELCA RMVDAMNAAP IRSDDGQEIA LTVSIGACRV
VSGSSIDAAF AEADAALYAA KRAGRNRFVL FDSGAGSALD AVATAPA
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