| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1442 |
|---|
| Symbol | |
|---|
| ID | 6409099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 1521978 |
|---|
| End bp | 1525346 |
|---|
| Gene Length | 3369 bp |
|---|
| Protein Length | 1122 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642711341 |
|---|
| Product | integral membrane sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001990457 |
|---|
| Protein GI | 192289852 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCGGGGC GGCAGCGCAT AGATCGCGTT CGGCGCCAGT ACAATCAGTG GGTCGCCAAC
CAGACCCTCG AAGACTACGC GCTTCGCTTC ACCGCCAAGA GCTCGCGCCG GTGGTCGGCA
GCTCGCGTCG CCAACACCGC CCTCGGCGCG ATCTCGTTCC TGGCACTGGA GGCGATCGGC
GGCACCATCA CGCTGAACTA CGGCGTCACC AACGCCACCG CGGCGATCCT GGTCGTCAGC
GTGATCATCT TCTGCTGCGG CCTGCCGATT GCCTACCACG CGGCCAAATG TGGCGTCGAC
ATCGACCTGC TGACGCGCGG CGCCGGCTTT GGCTATATCG GCTCGACCGT CACTTCGCTG
ATCTACGCCT CGTTCACCTT CCTGTTTTTC GCGATCGAGG CGGTGATCCT CGCCAATGCG
CTGGAACTGT GCTTCGGCCT GCCACTCCCG ATCGGCTATT TCTTCAGCGC GGTGGTGATC
ATCCCGGTGG TGACCTACGG CATTACGCTG ATCAGCCGGT TCCAACTTTG GACCCAGCCG
TTCTGGGTTC TGCTGCACAT CCTCCCGTTC GCCGCGATCG CAGTGAAGAG CCCGGAGTCG
TTCGTCGCCT GGACGCGCTT TGCCGGCGAG CAAGGCAGTC AGGACGGCAA GCTCGATCTG
TTGCTGTTCG GCACTGCAGC CTCAGTTGTG TTCGCGCTGG TCGCGCAGAT CGGCGAGCAG
GTCGACTTTC TGCGCTTTCT GCCGCGCGAT CGCCGGGCCT CGCGCGGCGC CTGGTGGATC
GCAATGATCA GCGCCGGCCC CGGCTGGATC GTGCCCGGCT CGCTAAAGCT GCTGGCCGGC
TCGTTCCTGG CCTATTTCGC GCTCAGCCGC GGCGCGCCGC CGGATCAGGC GGCCGAGCCG
GCCCACATGT ATCTCGAGGC GTTCCGCACC GTGCTGGAGC AGCCCGGCCT GGTGCTGGCG
CTGACCGGCG CGTTCGTGAT CCTGTCGCAG ATCAAGATCA ACGTCACCAA CGCCTATGCG
GGTTCGATAG CCTGGTCGAA CTTTTTCTCG CGGCTGACCC ACAGCCATCC CGGCCGCGTC
GTCTGGCTGG TCTTCAACGT GCTGGTGGCG CTGCTGCTGA TGGAGATCGG GGTCTATAAG
GCGCTGGAGC ATACGCTCGC GCTCTACTCC AACGTCGCAA TCGCCTGGGT CGGCGCCCTG
GTTTCAGATC TCGTCGTCAA CCGGCCGCTC GGGCTGCGGC CGAAGCACAT GGAGTTCAAG
CGAGCGCATC TCTACGACAT CAACCCTGTC GGCGTCGGCT CGATGACGAT CGCAACCGTG
GTGTCGATCA GCGCATTCTA TGGCGTGTTC GGGCCGACAG CGAAGGCGCT GGCGCCGTTC
GTGGCGCTCG TGGTCGCCTT CGTCACCGCG CCGATGATTG CCTTCGTCAC CGGCGGGCGA
TTCTATATCG CGCGCAAGCC GAAGCGGGCC TGGCAGACCG CCGAGTCAAT CAAGTGCTGC
ATCTGCGAGC ACTCGTTCGA GCCCGAAGAC ATGTCGTATT GCCCGGCCTA TGCGGGGCCG
ATCTGCTCGC TGTGCTGCTC GCTCGATGCA CGCTGCAACG ACCTGTGCAA GCCGCATGCG
CGGATCGACG CACAGTTCAC CGATGCGCTC GGCAAGATGC TGCCGCAGCG GGCCTACGCG
CTGCTGAACT CCCAGGTCGG GCACTATCTG ACCGTGTTCG CGGTCTCGGT CGGACTGATC
GGACTATCGC TATTCTTGAT CTATCTGCAG GTCGCGACCG CGAACGAGGC GCAGCAGATC
GAGCTCGCCG AGATTCTCTG GAAGCTGTTC TTCGCGGTCA CCATCATCGT CGGTGTGGTG
AGCTGGCTGT TCGTGCTAGC GCGGCTCAGC CGGCAGGCAG CCGAGGCCGA GACGCGGCGA
CAAACCCAGC TGCTGATGCA GGAGATCGAC GCCCACCGCC AGACCGACGC CGAGCTGCAG
CGCGCCAAAG AAGCTGCCGA GTCCGCCAAC CTCGCCAAGA GCCGCTACGT CGTCGGCCTC
AGCCACGAGC TGCGCTCGCC GCTCAATGCG ATCAGCGGCT ACGCGCAGCT GCTCGAACAG
GACAACACTC TGCCGCCGCG GCCGCGTGAC CAGATCCGGC TGATGCGGCG CAGCGCCGAC
CATCTCTCCG GCCTGATCGA CGGCCTGCTC GACATCTCCA AGATCGAAGC CGGCCGGCTG
TATCTGTCGC GCGACGAGGT ACGGTTCGGC GAATTTCTCG ACCAGCTTGT CGGTATGTTC
CGACTGCAGG CCGCCGCCAA GGACATCGAA TTCGTGTTCA AGCGGCCGCA ATATCTGCCG
CCGATGGTCT ATGCCGACGA GAAGCGGCTG CGCCAGGTGC TCATCAACCT GTTGTCGAAC
GCCATCAAGT TCACCCAGGA AGGCAGCGTC CACTTCATCG TGCACTATCG TAACCCAGTG
GCCGAACTCG AAGTGCGCGA TACGGGCCCC GGCATCCATA CCGACGACCT CGAGCGCATC
TTTGCGCCGT TCGAGCGCGG CGCGCTCGGC GCGGCACAGC CGCACAGCGG TACCGGCCTC
GGCCTCACCA TCAGCAAGCT GCTTGCGGGC GTGATGGGCG GTGACCTCAC CGTCACCTCG
ACGCCCGATA AGGGCTCAAC CTTCCGCGTC AAGCTGCTGC TGTCGGAGGT CACCAACCCG
ACCCGCACCC GCTCGATCCG CGCTCCGGTG CTCGGCTATC ACGGCCCGCG CAAGACCATC
CTGGTGACTG ACGACGATCC GGCGCAGCGC GGCCTGCTGC AGGATGCGCT GGCGCCGCTC
GGCTTCATCG TGCTGGTCGC AACCGACGGC TATTCCTGCA TCGATCTCGC CGAGCATTGC
CAACCTGATC TGTTCCTGCT CGACATTTCG ATGCCGGGGA TGGACGGCTG GACCGTGGCG
GAGACGCTCC GCACCCAAGG CCACCATCAC GCGCGCATCC TGATGCTGTC GGCAAGCGCG
CTGGAGGCGC ACGGCACGCT GCTGTCGCAG CCGTTCCACG ATGCCTATCT GATGAAGCCG
GTCGACATTC CGCGGCTGCT CGAACTGATC GGCCAGCTGC TCAAGATCGA TTGGATCTAC
AAGGGCGAGG CTACCGCCGC TGCAGCGAAC GCCACCGAGA TTCAGCACCC GCCGATGCAG
CACGTCGAGG AATTGATCGA GCTCGGCAAG ATCGGCTACA TCCGCGGCAT CGAATCCAAA
CTTGATCAGA TCCACACCGA TTATCCGGAG ACCTGGGCGT TCGTGTCGCA GATGCGAACG
ATGGTGGAGC AGTTCGACCT CGATACCTAC ATGAAGACGC TGAACACGCT GTATCGCCAT
GAACAATGA
|
|---|
| Protein sequence | MAGRQRIDRV RRQYNQWVAN QTLEDYALRF TAKSSRRWSA ARVANTALGA ISFLALEAIG
GTITLNYGVT NATAAILVVS VIIFCCGLPI AYHAAKCGVD IDLLTRGAGF GYIGSTVTSL
IYASFTFLFF AIEAVILANA LELCFGLPLP IGYFFSAVVI IPVVTYGITL ISRFQLWTQP
FWVLLHILPF AAIAVKSPES FVAWTRFAGE QGSQDGKLDL LLFGTAASVV FALVAQIGEQ
VDFLRFLPRD RRASRGAWWI AMISAGPGWI VPGSLKLLAG SFLAYFALSR GAPPDQAAEP
AHMYLEAFRT VLEQPGLVLA LTGAFVILSQ IKINVTNAYA GSIAWSNFFS RLTHSHPGRV
VWLVFNVLVA LLLMEIGVYK ALEHTLALYS NVAIAWVGAL VSDLVVNRPL GLRPKHMEFK
RAHLYDINPV GVGSMTIATV VSISAFYGVF GPTAKALAPF VALVVAFVTA PMIAFVTGGR
FYIARKPKRA WQTAESIKCC ICEHSFEPED MSYCPAYAGP ICSLCCSLDA RCNDLCKPHA
RIDAQFTDAL GKMLPQRAYA LLNSQVGHYL TVFAVSVGLI GLSLFLIYLQ VATANEAQQI
ELAEILWKLF FAVTIIVGVV SWLFVLARLS RQAAEAETRR QTQLLMQEID AHRQTDAELQ
RAKEAAESAN LAKSRYVVGL SHELRSPLNA ISGYAQLLEQ DNTLPPRPRD QIRLMRRSAD
HLSGLIDGLL DISKIEAGRL YLSRDEVRFG EFLDQLVGMF RLQAAAKDIE FVFKRPQYLP
PMVYADEKRL RQVLINLLSN AIKFTQEGSV HFIVHYRNPV AELEVRDTGP GIHTDDLERI
FAPFERGALG AAQPHSGTGL GLTISKLLAG VMGGDLTVTS TPDKGSTFRV KLLLSEVTNP
TRTRSIRAPV LGYHGPRKTI LVTDDDPAQR GLLQDALAPL GFIVLVATDG YSCIDLAEHC
QPDLFLLDIS MPGMDGWTVA ETLRTQGHHH ARILMLSASA LEAHGTLLSQ PFHDAYLMKP
VDIPRLLELI GQLLKIDWIY KGEATAAAAN ATEIQHPPMQ HVEELIELGK IGYIRGIESK
LDQIHTDYPE TWAFVSQMRT MVEQFDLDTY MKTLNTLYRH EQ
|
|---|
| |