Gene Rpal_1400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1400 
Symbol 
ID6409057 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp1474090 
End bp1475979 
Gene Length1890 bp 
Protein Length629 aa 
Translation table11 
GC content70% 
IMG OID642711299 
ProductGAF modulated sigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_001990415 
Protein GI192289810 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGTCG CATCAAACCG TGATGCCGTC GTCACTGCGC GCCGTCGCTT CTTCGGGGAA 
GGGCGGTCTG TCGATGGAAT GCTCGCCGCT CCGATCCTAC GGTCGTGGCA GCGCTGCGCC
GGCCAGGGGC TGGACGCCAG CCGCTCGCCG CTGGTCGAGC CGCCCACCGC CCGCGAACTG
CGCGAATTTC AGGAACGCCA CGACCGGCTC GGCCGCCTCG CGCGGCCGGA ACTCAATGCT
CTGCAAGGCG ATGCACGTCT GACCGGCAGC GTCGTCATTC TCACCGATGC GGCCGGCGTC
GTCCTCGATA TGATCGGCTC CGGCGAATTT GCGGGGCGTG CGGCGCAAGT GGCGCTGCGG
CCCGGCGTGT CGTGGAGCGA AGCCGACACC GGCACCAATG CGATCGGCAC GGCGCTGGTC
GAGCGCCAGC CGATTGCAGT GCACGGCGCC GAACATTTCT TCGAGCGTCA CCGCATCCTG
GCTTGCGCCG CCGCGCCGCT GATCGATCCG CGCGGTGTGG TCGCCGGTGC GCTCGATATG
ACAGGCCCCG CGGCGATCCG CCATGTCCAC GCGCTCGGCC TGATGCGGCT CGCCGCCGAG
CAGATCGAGC ACCGGTTCTT CACCGAAGGA TTCGAGCACT GCACCATGCT GCGGCTGCAC
ACCGACCGTG CGCTGCTCGG CACGCCGCGC GAAGGCGTGC TGGCGTTTGC CGATGGCGTG
CTGGTCGGCG CCAATCGACA CGGCCTCGAT CTGATGAATC TCGATTGGCC GGCGCTCGAT
CTGGCCAGGC TCGAAACGCT GCTGCCGGGT GTGCGCCCCT CGGATCAGAT CCAGATGCTG
CGCGGCCCTC GTGGCACGCG GCTGTGGGGC CGGTTGGTCG ACCCGCTGCG CCGCAGCCCA
CGCGCGCCTG CAGCATCGAT GCCCGCTGCT GTGCCGGCGG CTCCGGCCGG GGAGGTCGAG
CCGATCCTCG ATGCAGAAAT GATGGCGCAG CTGTCGCGCA CCGTGCGGCT GGTCGAGGCG
GGGATTCCGG TGCTGCTGCT CGGCGAGACC GGATCCGGCA AGGATGTTTT CGCGCGCCGC
GTTCACGCCG AGAGTGCGCG GCGCAACAAG CCGTTCGTGC CGGTGAATTG CGCGGCGCTC
CCCGAGGGGC TGATCGAGTC GGAGCTGTTC GGCTACGAGG CCGGTGCCTT CACCGGCGCG
CGGCGGCAGG GCGCGCCCGG GCTGCTGCGT CAGGCCGATG GCGGCGTGCT GTTTCTCGAC
GAGATCGGCG ACATGCCGCT GTCGTTGCAG AGCCGGCTGC TGCGCGTGCT GCAGGACAAG
CAGATTTCGC CGCTCGGCGG TGGCCGTCCG GTGCCGGTCG ACTTCGCGTT GATCTGCGCG
ACGCACCAGC CGCTCGGCAC CCTGCTGGCC GCCGGGGCGT TCCGCCAGGA TCTGTACTTC
CGCATTGCGC AATATGTCGT CGAGCGGCCG CCGGTGCGCC ATCATCCGGA CCGGCTCGCG
CTGATTCGGA CGCTGTGGCG CCAGCTCGGC GGCGAAGACG CCGGCGTGCA GCTCTCGGCT
GAGGTCGAGC GTGTGCTCGC CGCCTACAAC TGGCCGGGCA ACTACCGGCA ACTGGTCGGA
ACGCTACGCG CCCTGTTGGT ACTTGGCGAG CCGGGACACC CGGTCGAGGT CTCGGCACTG
CCCGCCGAAA TCACCGCGGC GGCCGGCGCG GTGGAGAGTC AGGTTTCCGA GACGCTCCCG
GGGACGTCGC TGGCGGAACA GACCCGGTCA GTGCTGCAGG CCGCATTGGA CGCCAGCGGC
GGAAACGTAT CGCGCGCCGC GCGCCGGCTC GGGATCGACC GAAGTACGTA CTATCGCCGC
CTGCTCAAGG ACAAAGATCG CGGCCGATGA
 
Protein sequence
MSVASNRDAV VTARRRFFGE GRSVDGMLAA PILRSWQRCA GQGLDASRSP LVEPPTAREL 
REFQERHDRL GRLARPELNA LQGDARLTGS VVILTDAAGV VLDMIGSGEF AGRAAQVALR
PGVSWSEADT GTNAIGTALV ERQPIAVHGA EHFFERHRIL ACAAAPLIDP RGVVAGALDM
TGPAAIRHVH ALGLMRLAAE QIEHRFFTEG FEHCTMLRLH TDRALLGTPR EGVLAFADGV
LVGANRHGLD LMNLDWPALD LARLETLLPG VRPSDQIQML RGPRGTRLWG RLVDPLRRSP
RAPAASMPAA VPAAPAGEVE PILDAEMMAQ LSRTVRLVEA GIPVLLLGET GSGKDVFARR
VHAESARRNK PFVPVNCAAL PEGLIESELF GYEAGAFTGA RRQGAPGLLR QADGGVLFLD
EIGDMPLSLQ SRLLRVLQDK QISPLGGGRP VPVDFALICA THQPLGTLLA AGAFRQDLYF
RIAQYVVERP PVRHHPDRLA LIRTLWRQLG GEDAGVQLSA EVERVLAAYN WPGNYRQLVG
TLRALLVLGE PGHPVEVSAL PAEITAAAGA VESQVSETLP GTSLAEQTRS VLQAALDASG
GNVSRAARRL GIDRSTYYRR LLKDKDRGR