| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1400 |
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| Symbol | |
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| ID | 6409057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1474090 |
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| End bp | 1475979 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 642711299 |
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| Product | GAF modulated sigma54 specific transcriptional regulator, Fis family |
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| Protein accession | YP_001990415 |
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| Protein GI | 192289810 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGTCG CATCAAACCG TGATGCCGTC GTCACTGCGC GCCGTCGCTT CTTCGGGGAA
GGGCGGTCTG TCGATGGAAT GCTCGCCGCT CCGATCCTAC GGTCGTGGCA GCGCTGCGCC
GGCCAGGGGC TGGACGCCAG CCGCTCGCCG CTGGTCGAGC CGCCCACCGC CCGCGAACTG
CGCGAATTTC AGGAACGCCA CGACCGGCTC GGCCGCCTCG CGCGGCCGGA ACTCAATGCT
CTGCAAGGCG ATGCACGTCT GACCGGCAGC GTCGTCATTC TCACCGATGC GGCCGGCGTC
GTCCTCGATA TGATCGGCTC CGGCGAATTT GCGGGGCGTG CGGCGCAAGT GGCGCTGCGG
CCCGGCGTGT CGTGGAGCGA AGCCGACACC GGCACCAATG CGATCGGCAC GGCGCTGGTC
GAGCGCCAGC CGATTGCAGT GCACGGCGCC GAACATTTCT TCGAGCGTCA CCGCATCCTG
GCTTGCGCCG CCGCGCCGCT GATCGATCCG CGCGGTGTGG TCGCCGGTGC GCTCGATATG
ACAGGCCCCG CGGCGATCCG CCATGTCCAC GCGCTCGGCC TGATGCGGCT CGCCGCCGAG
CAGATCGAGC ACCGGTTCTT CACCGAAGGA TTCGAGCACT GCACCATGCT GCGGCTGCAC
ACCGACCGTG CGCTGCTCGG CACGCCGCGC GAAGGCGTGC TGGCGTTTGC CGATGGCGTG
CTGGTCGGCG CCAATCGACA CGGCCTCGAT CTGATGAATC TCGATTGGCC GGCGCTCGAT
CTGGCCAGGC TCGAAACGCT GCTGCCGGGT GTGCGCCCCT CGGATCAGAT CCAGATGCTG
CGCGGCCCTC GTGGCACGCG GCTGTGGGGC CGGTTGGTCG ACCCGCTGCG CCGCAGCCCA
CGCGCGCCTG CAGCATCGAT GCCCGCTGCT GTGCCGGCGG CTCCGGCCGG GGAGGTCGAG
CCGATCCTCG ATGCAGAAAT GATGGCGCAG CTGTCGCGCA CCGTGCGGCT GGTCGAGGCG
GGGATTCCGG TGCTGCTGCT CGGCGAGACC GGATCCGGCA AGGATGTTTT CGCGCGCCGC
GTTCACGCCG AGAGTGCGCG GCGCAACAAG CCGTTCGTGC CGGTGAATTG CGCGGCGCTC
CCCGAGGGGC TGATCGAGTC GGAGCTGTTC GGCTACGAGG CCGGTGCCTT CACCGGCGCG
CGGCGGCAGG GCGCGCCCGG GCTGCTGCGT CAGGCCGATG GCGGCGTGCT GTTTCTCGAC
GAGATCGGCG ACATGCCGCT GTCGTTGCAG AGCCGGCTGC TGCGCGTGCT GCAGGACAAG
CAGATTTCGC CGCTCGGCGG TGGCCGTCCG GTGCCGGTCG ACTTCGCGTT GATCTGCGCG
ACGCACCAGC CGCTCGGCAC CCTGCTGGCC GCCGGGGCGT TCCGCCAGGA TCTGTACTTC
CGCATTGCGC AATATGTCGT CGAGCGGCCG CCGGTGCGCC ATCATCCGGA CCGGCTCGCG
CTGATTCGGA CGCTGTGGCG CCAGCTCGGC GGCGAAGACG CCGGCGTGCA GCTCTCGGCT
GAGGTCGAGC GTGTGCTCGC CGCCTACAAC TGGCCGGGCA ACTACCGGCA ACTGGTCGGA
ACGCTACGCG CCCTGTTGGT ACTTGGCGAG CCGGGACACC CGGTCGAGGT CTCGGCACTG
CCCGCCGAAA TCACCGCGGC GGCCGGCGCG GTGGAGAGTC AGGTTTCCGA GACGCTCCCG
GGGACGTCGC TGGCGGAACA GACCCGGTCA GTGCTGCAGG CCGCATTGGA CGCCAGCGGC
GGAAACGTAT CGCGCGCCGC GCGCCGGCTC GGGATCGACC GAAGTACGTA CTATCGCCGC
CTGCTCAAGG ACAAAGATCG CGGCCGATGA
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| Protein sequence | MSVASNRDAV VTARRRFFGE GRSVDGMLAA PILRSWQRCA GQGLDASRSP LVEPPTAREL
REFQERHDRL GRLARPELNA LQGDARLTGS VVILTDAAGV VLDMIGSGEF AGRAAQVALR
PGVSWSEADT GTNAIGTALV ERQPIAVHGA EHFFERHRIL ACAAAPLIDP RGVVAGALDM
TGPAAIRHVH ALGLMRLAAE QIEHRFFTEG FEHCTMLRLH TDRALLGTPR EGVLAFADGV
LVGANRHGLD LMNLDWPALD LARLETLLPG VRPSDQIQML RGPRGTRLWG RLVDPLRRSP
RAPAASMPAA VPAAPAGEVE PILDAEMMAQ LSRTVRLVEA GIPVLLLGET GSGKDVFARR
VHAESARRNK PFVPVNCAAL PEGLIESELF GYEAGAFTGA RRQGAPGLLR QADGGVLFLD
EIGDMPLSLQ SRLLRVLQDK QISPLGGGRP VPVDFALICA THQPLGTLLA AGAFRQDLYF
RIAQYVVERP PVRHHPDRLA LIRTLWRQLG GEDAGVQLSA EVERVLAAYN WPGNYRQLVG
TLRALLVLGE PGHPVEVSAL PAEITAAAGA VESQVSETLP GTSLAEQTRS VLQAALDASG
GNVSRAARRL GIDRSTYYRR LLKDKDRGR
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