| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1394 |
|---|
| Symbol | |
|---|
| ID | 6409051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1466905 |
|---|
| End bp | 1467993 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642711293 |
|---|
| Product | chorismate synthase |
|---|
| Protein accession | YP_001990409 |
|---|
| Protein GI | 192289804 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0082] Chorismate synthase |
|---|
| TIGRFAM ID | [TIGR00033] chorismate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.187693 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTCA ATACCTTCGG CCATCTATTT CGCGTCACCA CCTTTGGCGA AAGCCATGGG
GTGGCGATCG GCTGCGTGGT TGACGGCTGC CCGCCGCTGA TCCCGCTGAC CGAGGCCGAT
ATCCAGGGCG ATCTCGACCG CCGCCGGCCC GGCCAGTCGC GCTTCACCAC CCAGCGCCAG
GAAGCCGATC AGGTGAAGAT CCTGTCCGGC GTGATGGTGC ATCCCGAGAC CGGCGTGCAG
GTGACGACCG GCACCCCGAT CGCGCTGTTG ATCGAGAATA CCGACCAGCG CTCCAAGGAC
TATTCGGACA TCCAGAACAA GTATCGCCCC GGCCACGCCG ACTTCACCTA CGAGGCGAAG
TACGGCATCC GCGACTATCG CGGCGGTGGC CGCTCCTCGG CGCGCGAGAC CGCGACCCGG
GTCGCCGCAG GCGCGATCGC CCGCAAGGTG ATTGCCGGCA TGACCGTGCG CGGCGCGCTG
GTGCAGATCG GTCCGCACAA GATCGACCGT GACAAATGGG ATTGGGACGA GATCGGCAAC
AACCCGTTCT TCTGCCCGGA CAAGGACAAG GCGGCGTTCT ACGCCGACTA TCTCGACGGC
ATCCGCAAAT CCGGCTCGTC GATCGGCGCG GTGGTGGAGA TCGTGGCCGA GGGCGTGCCG
GCCGGGCTCG GTGCGCCGAT CTATGCCAAG CTCGACGGCG ACCTCGCCGC AGCGCTGATG
AGCATCAATG CGGTCAAGGG CGTCGAGATC GGCGACGGCT TCGCCAGTGC CGAACTGACC
GGCGAACAGA ACGCCGACGA GATGCGGACC GGCAATCATG GTCCGGCTTT CCTGTCGAAC
CATGCCGGCG GCATCCTGGG CGGCATTTCC ACCGGCCAGC CGGTGGTGGC GCGGTTCGCC
GTCAAGCCGA CCTCGTCGAT CCTGACCCCG CGCAAGACCG TCGATCGCAC CGGCCACGAC
ACCGAGATTC TCACCAAGGG CCGCCACGAC CCCTGCGTCG GCATCCGCGC CGTGCCGGTC
GGCGAGGCGA TGGTCGCTTG CGTGCTGGCC GACCACCTGC TGCGGCACCG GGGACAGGTC
GGCGGCTGA
|
|---|
| Protein sequence | MSFNTFGHLF RVTTFGESHG VAIGCVVDGC PPLIPLTEAD IQGDLDRRRP GQSRFTTQRQ
EADQVKILSG VMVHPETGVQ VTTGTPIALL IENTDQRSKD YSDIQNKYRP GHADFTYEAK
YGIRDYRGGG RSSARETATR VAAGAIARKV IAGMTVRGAL VQIGPHKIDR DKWDWDEIGN
NPFFCPDKDK AAFYADYLDG IRKSGSSIGA VVEIVAEGVP AGLGAPIYAK LDGDLAAALM
SINAVKGVEI GDGFASAELT GEQNADEMRT GNHGPAFLSN HAGGILGGIS TGQPVVARFA
VKPTSSILTP RKTVDRTGHD TEILTKGRHD PCVGIRAVPV GEAMVACVLA DHLLRHRGQV
GG
|
|---|
| |