Gene Rpal_1386 details

Gene Information

• Locus tag: Rpal_1386
• ID: 6409043
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 1460658
• End bp: 1461332
• Gene Length: 675 bp
• Protein Length: 224 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642711285
• Product: Carboxymethylenebutenolidase
• Protein accession: YP_001990401
• Protein GI: 192289796
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG0412] Dienelactone hydrolase and related enzymes

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.670188
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCACGC TGATCACTTT CAAACGTCCG GATGGCAAGG AAGCGAGCGG CTATCTCGCC 
AACGCCGCCA GCGGCAGGGC GCCGGGCGTA GTGGTGATCC AGGAATGGTG GGGGCTGTCC 
GAGCAGATCA AGGGATTGAC CGACCGCCTC GCGCTGGCCG GCTTCGATGC GCTGGCGCCC 
GACCTCTACA ACGGCACGGT GGTGCCGTAT CACGACACGG ACGCCGCCAA TAAAGAGATG 
AGCTCGCTCG ACTTCATGGA CGCCACCACC CAGACGGTGC GCGGCGCAGT GAACTATCTG 
TCGCGCAACG GCGCCAAGGT TGGTCTCACC GGCTTCTGCC TCGGCGGGGC GGTGACGGTG 
ATCGGCGCGT GCAAGATTCC GGAACTGAGC GCTGCGGTGG TGTTTTACGG CATTCCGCCG 
GAGCAGGCCG CCAAGCCAGC CGACGTACAG GTGCCGATGC AGGGCCATTT CGCCAATCGC 
GACGATTGGT GCACCCCGCA GGTGGTGGAT GCGTTCGAGG CCGGATTGAA GGCCGCCGGC 
AAGCAGGCCG AGTTCTTCCG CTATGAGGCC GACCACGCTT TCGTCAACGA GCAGCGCGCG 
GCGGTGCATG ACCGCGAGGC GGCGGAACTC GCGTGGAGTC GATCGATGCA GTTCTTTGGA 
AAGCATCTCT CCTGA 

 

Protein sequence

MGTLITFKRP DGKEASGYLA NAASGRAPGV VVIQEWWGLS EQIKGLTDRL ALAGFDALAP 
DLYNGTVVPY HDTDAANKEM SSLDFMDATT QTVRGAVNYL SRNGAKVGLT GFCLGGAVTV 
IGACKIPELS AAVVFYGIPP EQAAKPADVQ VPMQGHFANR DDWCTPQVVD AFEAGLKAAG 
KQAEFFRYEA DHAFVNEQRA AVHDREAAEL AWSRSMQFFG KHLS