Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1385 |
Symbol | |
ID | 6409042 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 1458433 |
End bp | 1460499 |
Gene Length | 2067 bp |
Protein Length | 688 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642711284 |
Product | cytochrome c1 |
Protein accession | YP_001990400 |
Protein GI | 192289795 |
COG category | [C] Energy production and conversion |
COG ID | [COG1290] Cytochrome b subunit of the bc complex [COG2857] Cytochrome c1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGGAC CCTCGACCTA TCAGCCACAA AGCCCCTTGA TGAAGTGGCT GGAGCAGCGC CTGCCGATCG CGGGCCTCGT TCATTCCTCC TTCATCGCCT ACCCGACGCC GCGTAACCTG AACTACTGGT GGACGTTCGG TGCCATCCTG TCGATGATGC TGGCGGTGCA GATCGTCACC GGCATCGTGC TGGCGATGCA CTACACGCCG CACGTCGATC TCGCCTTCGA CTCGGTCGAG CGGATCGTTC GCGACGTCAA CTACGGCTGG CTGCTGCGCA ACATGCATGC CGCCGGCGCG TCGATGTTCT TCATCGCCGT CTACGTCCAC ATGCTCCGCG GTCTGTACTA CGGCTCGTAC AAGGCGCCGC GCGAAGTGTT GTGGATCCTC GGCGTCATCA TCTACCTGCT GATGATGGCG ACCGGCTTCA TGGGTTACGT GCTGCCGTGG GGCCAGATGA GCTTCTGGGG CGCCACCGTG ATCACCAACC TGTTCTCGGC GTTCCCGATC GTCGGCGACA GCATCGTGAC GCTGCTGTGG GGCGGCTATT CGGTCGGCAA CCCGACCCTG AATCGCTTCT TCTCGCTGCA CTACCTGCTG CCGTTCGTGA TCGCCGGCGT GGTCGTGCTG CACGTCTGGG CGCTGCACGT CACCGGCCAG AACAACCCGG CTGGCGTCGA GCCGAAGACC GAGAAGGACA CCGTTCCGTT CACGCCTTAC GCGACCCTCA AGGACGTGTT CGGCATGTCG TGCTTCCTGG TGTTCTACTC CTGGTTCATC TTCTACATGC CGAACTACCT CGGCGACGCG GAGAATTACG TTCCGGCCAA CCCGGGCGTG ACCCCGCCGC ACATCGTGCC GGAATGGTAC TACCTGCCGT TCTACGCGAT CCTGCGTTCG ATCCCGAACA AGCTGATGGG CGTCATCGCG ATGTTCGGTG CGATCATCGT GCTGCTGTTC CTGCCCTGGC TCGACAGCTG CAAGGTGCGC TCGTCCCGCT ATCGGCCGAT GGCCAAGCGC TTCTTCTGGG CCTTCGTGGT GACCTGCCTG GTGCTCGGCT GGCTCGGCTC GAAGCCTGCG GAAGGCATCT ACACCACGCT CGGTCAGGTG TTCACCTTCT TCTACTTCGC CTACTTCCTG ATCGTGCTCC CGGTGCTGGG TCGTATGGAA AAGACTCTGC CGCTGCCGAA CTCGATCGCC GAAGACGTGC TCAACAAGGG CAAGGTCGCC AAGGCCGTTG CCGGGCTGGT GGCGGTGCTG TTCGCAGGCG GCCTGATGGT CGGCGGCGTG CAGCCGGCCA AGGCCAACGA AGGTGGCGAG AACCCGCCGT CGCTGCAGTG GAGCTTTGCG GGTCCGTTCG GCACCTACGA TCGCGCCCAG CTGCAGCGTG GCTTCAAGAT CTACAAGGAA GTCTGCTCCA ACTGCCACTC GCTGAAGCTG TTGCAGTATC GCAACCTCGC CGAGCCGGGT GGCCCGGGCT TCACCGTGGA GCAGGCCAAG GAGATCGCGG CTGCTGCGCA GATCAAGGAC GGTCCGAACG ACCAGGGTGA GATGTTCGAG CGTCCCGGCC GGCTCGCCGA CACCTTCCAC TCGCCGTTCC CGAACGAGCA GGCTGCCCGT GCGGCCAACG GTGGTGCGGC TCCGCCGGAC ATGTCGCTGC TGGCCAAGGC GCGCACCTAT CCGCGTGGCT TCCCGCAGTT CATCTTCGAC TTCTTCACCC AGTTCCAGGA GCAGGGCCCG AACTACATCG CCGCGCTGCT GCAGGGCTAC GAAGACACCC CGCCGGAAGG CTTCAGTCTC CCGGACGGCT CGTTCTACAA CAAGTGGTAT CCGGGCCACT CGATCAAGAT GCCGCCGCCG ATCCAGGCCG GCATGGTCAG CTACGACGAC GGCACCCCGG AGACCCTCGA GCAGTACGCC AAGGACATCT CGACGTTCCT GGTGTGGGCT TCCGAGCCGC ACATGGAGGC CCGCAAGCGC CTCGGTCTGC AGGTGATGAT CTTCTTGGTC ATCCTTTCCA GCCTGCTGTA CTTCGTGAAG CGCAAGGTGT GGTCGAACGT CCACTAA
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Protein sequence | MSGPSTYQPQ SPLMKWLEQR LPIAGLVHSS FIAYPTPRNL NYWWTFGAIL SMMLAVQIVT GIVLAMHYTP HVDLAFDSVE RIVRDVNYGW LLRNMHAAGA SMFFIAVYVH MLRGLYYGSY KAPREVLWIL GVIIYLLMMA TGFMGYVLPW GQMSFWGATV ITNLFSAFPI VGDSIVTLLW GGYSVGNPTL NRFFSLHYLL PFVIAGVVVL HVWALHVTGQ NNPAGVEPKT EKDTVPFTPY ATLKDVFGMS CFLVFYSWFI FYMPNYLGDA ENYVPANPGV TPPHIVPEWY YLPFYAILRS IPNKLMGVIA MFGAIIVLLF LPWLDSCKVR SSRYRPMAKR FFWAFVVTCL VLGWLGSKPA EGIYTTLGQV FTFFYFAYFL IVLPVLGRME KTLPLPNSIA EDVLNKGKVA KAVAGLVAVL FAGGLMVGGV QPAKANEGGE NPPSLQWSFA GPFGTYDRAQ LQRGFKIYKE VCSNCHSLKL LQYRNLAEPG GPGFTVEQAK EIAAAAQIKD GPNDQGEMFE RPGRLADTFH SPFPNEQAAR AANGGAAPPD MSLLAKARTY PRGFPQFIFD FFTQFQEQGP NYIAALLQGY EDTPPEGFSL PDGSFYNKWY PGHSIKMPPP IQAGMVSYDD GTPETLEQYA KDISTFLVWA SEPHMEARKR LGLQVMIFLV ILSSLLYFVK RKVWSNVH
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