Gene Rpal_1362 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1362 
SymboluvrC 
ID6409019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp1433891 
End bp1436005 
Gene Length2115 bp 
Protein Length704 aa 
Translation table11 
GC content68% 
IMG OID642711261 
Productexcinuclease ABC subunit C 
Protein accessionYP_001990377 
Protein GI192289772 
COG category[L] Replication, recombination and repair 
COG ID[COG0322] Nuclease subunit of the excinuclease complex 
TIGRFAM ID[TIGR00194] excinuclease ABC, C subunit 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTCATG ATCCCGCCGA GCCGCCTGCG GCCGCGGCCG AACCACCGCT CGACACGGCC 
TCCCCTGACG GCGCTGCGCC CGTCGCGGAC ACGCGCCCGG CTGCGGGCAA CCAGGACATC
GACGCGGCGA CCGCCTCGCT TGCGGTCGAG GAGGACGACG AGGCGCGGCT GCCGGAGGTG
GAGGACGAGC AGGAAGCTGA GCCGGCGCAG GCCGGTGCCG GGCCGATGGC GGTGGGCCGG
TCGGCGATCG CGCGCGCGGT GCGGCTCGCC CCGACCTCAC CTGGCGTCTA CCGGATGCTG
AACGCCGAGC GCGACGTGCT CTACGTCGGT AAGGCCAAGA ATGTGAAGAA GCGGCTGGCG
TCCTACGCCC GCCCCACAGG CCAGGTGCTG CGGATCGCAC GGATGATCGC GCTCACCGTC
GAGGTCGAGG TGATCTCCAC CACGACCGAG ACTGAGGCGC TGCTGCTCGA AGCCAACCTG
ATCAAGCAGC TCCGGCCGCG CTTCAACGTC CAGCTCCGTG ACGACAAGTC GTTTCCCTAC
ATCCTGATCA CCGGCGACCA TTGGGCGCCG CAGATCCTCA AGCATCGCGG CGCGCAGAGC
CGCCCCGGAC GGTATTTCGG TCCGTTTGCC TCGGCCGGTG CGGTGAACCG CACCATCACG
GCGCTGCAGC GCGCGTTCCT GGTGCGGTCC TGCACCGACT CGTTCTTCGA GAGCCGAACC
CGCCCCTGCC TGCTCTATCA AATCCGGCGG TGCGCCGGCC CGTGCACCGG TGAGGTCGAC
TTCCCCGGTT ACAGTGAGCT GGTGCGCGAG GCGACCGACT TCCTGTCTGG CCGCAGCCGG
GCGGTGAAGG AGCTGCTGGC GGCCGAGATG GAGAAAGCGT CGGGCGAGCT CGAATTCGAG
ACCGCGGCGC TGTACCGCGA CCGTCTCGCC GCGCTGTCGG CGATCCAGTC CCAGCAGGGC
ATCAATCCAC GCACCGTCGA AGAGGCCGAT GTGTTCGCCA TCCATCAGGA CGGCGGCTAC
TCGTGCGTCG AAGTGTTCTT CTTCCGCACC GGCCAGAACT GGGGCAACCG CGCCTACTTC
CCGCGCGCCG AGAAGTCGTT CACGCCGGCC GAAGTGCTCG GCGCCTTCGT GGCGCAGTTC
TATGACGACA AGCCGCCGCC GAAGCTGATC CTGTTGTCGC ACGAGATCGA GGAGGCCGAG
CTGCTCGCCG ACGCGCTGTG CGTCAAGGCC GGGCACAAGG TCGAGATCAC GGTGCCCAAG
CGCGGCGAGA AGAAGGAACT GGTCGCCCAC GCCCAGACCA ACGCGCGCGA AGCGCTCGGC
CGCAAGCTCG CCGACACCGC CACCCAGGCC CGGCTGCTGG AAAACCTCGC CACCACGCTC
GGCCTGCCGA AGACGCCGCA GCGGATCGAG GTGTACGACA ACAGCCACAT CCAGGGCACC
AACGCGGTCG GCGCGATGAT CGTCGCCGGC CCGGACGGCT TCATCAAGAA CCAGTACCGC
AAATTCAACA TTCGCTCCGA AGGCCTCACG CCGGGCGACG ACTACGCGAT GATGCGCGAG
GTGCTGCAGC GGCGGTTCAA GCGGCTGGTG ACGTCACAGG CCGAAGGCGA CGGCGAGGCC
GCCGCGAAGG CCAAGCCGAA GGATGACGAT GTTCCGCAGT GGCCCGACCT CGTGATCATC
GACGGCGGCC GCGGCCAGCT CAACGCCGCG CGCGAAGCAT TGTCCGGCAT CGGCTTGACC
GACCAGGTCA CCCTGCTCGG CGTCGCCAAG GGCCCGGACC GCGACGCCGG GCGCGAAACA
CTGTTCCTGC CGGACCGCGA CGCGATCAAG CTCGAGCCGC GCGACCCTGT GCTGTATTTC
ATCCAGCGGC TGCGCGACGA GGCGCATCGT TTCGTGATCG GGTCGCATCG CACGCTGCGC
AAGAAGGACA TCCGCGAGGC CGGCCTGCAG GAGATCCCCG GCATCGGCCC GACGCGCAAG
CGCGCGCTGC TGCTGCATTT CGGCACGCTG AAGGAAATCG AGCGGGCCTC GATCGCCGAT
CTCGGCAAAG TTCCAGGCAT CAGCGCCGAG AGTGCCAAGC GAATCTTCGA GTTTTTCCAT
GCCCGTCCGG ACTGA
 
Protein sequence
MIHDPAEPPA AAAEPPLDTA SPDGAAPVAD TRPAAGNQDI DAATASLAVE EDDEARLPEV 
EDEQEAEPAQ AGAGPMAVGR SAIARAVRLA PTSPGVYRML NAERDVLYVG KAKNVKKRLA
SYARPTGQVL RIARMIALTV EVEVISTTTE TEALLLEANL IKQLRPRFNV QLRDDKSFPY
ILITGDHWAP QILKHRGAQS RPGRYFGPFA SAGAVNRTIT ALQRAFLVRS CTDSFFESRT
RPCLLYQIRR CAGPCTGEVD FPGYSELVRE ATDFLSGRSR AVKELLAAEM EKASGELEFE
TAALYRDRLA ALSAIQSQQG INPRTVEEAD VFAIHQDGGY SCVEVFFFRT GQNWGNRAYF
PRAEKSFTPA EVLGAFVAQF YDDKPPPKLI LLSHEIEEAE LLADALCVKA GHKVEITVPK
RGEKKELVAH AQTNAREALG RKLADTATQA RLLENLATTL GLPKTPQRIE VYDNSHIQGT
NAVGAMIVAG PDGFIKNQYR KFNIRSEGLT PGDDYAMMRE VLQRRFKRLV TSQAEGDGEA
AAKAKPKDDD VPQWPDLVII DGGRGQLNAA REALSGIGLT DQVTLLGVAK GPDRDAGRET
LFLPDRDAIK LEPRDPVLYF IQRLRDEAHR FVIGSHRTLR KKDIREAGLQ EIPGIGPTRK
RALLLHFGTL KEIERASIAD LGKVPGISAE SAKRIFEFFH ARPD