| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1346 |
|---|
| Symbol | |
|---|
| ID | 6409003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1418082 |
|---|
| End bp | 1419479 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642711245 |
|---|
| Product | peptidase U62 modulator of DNA gyrase |
|---|
| Protein accession | YP_001990361 |
|---|
| Protein GI | 192289756 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.200432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACTCTT CACCAAGCGC ACGCTCGCCG GCTTCGCCCC CTGTGGATTC CGCTTTGTTC
GATCAGTCGG CTCTGAGCGA TCTGGCACAG CGTCTGGTCG AGGCGGCGCG GCGCGCTGGC
GCCGATCAGG CCGACGCTGT GGCGGTGCGT GGGGTGTCTC ACGGTGTCGA AGTGCGCGAT
GGGCGGATGC AGGAGTCCGA GCGCTCGGAG GGCGACGACG TTGGCCTCCG GGTGATCGTC
GGCCGCCGCC AGGCGGTGGT CTCGACCAAC GACATCAGCG GCGACGCGGT CACCAAGCTT
GCCGAGCGCG CGGTGGCGAT GGCCCGCGTC GCGCCGGACG ACAAGTATGT CGGCCTCGCC
GATCCTGAAC TGCTGGCGCA CGATTTTCCT GAGCTCGATC TGCTCGATCC GAACACGCCC
TCGACTGCCG AGTTGGAGCG GCGCGCCCGC GCCGCGGAGG CCGCAGCGCT CGCAGTTCCC
GGAATCAACA AGTCAGGCGG CGCCTCGGCG TCGTCGGGGA TCGGCGGCAT GGTGCTGGTG
ACGTCGACCG GTTTCCAAGG CTCGTTTCTG CGCTCAAGCC ACAGCATCTC GATGACCGCG
ATTGCGGGCG AGGGCACCGG CATGGAGCGG GACTATGAAT ATACGACGGC GCCGCACGCC
TCCGACCTGA TGTCGCCCGA GGAAGTGGGG CGGGTTGCCG GCGAGCGCAC CGCGGCCCGC
GTCGGGCCGC GCAAGGTCGA GACCTGCAAG GTGCCGGTGG TGTTCGATCC GCGCGTTGCG
GGCTCGCTGG TCGGGCATCT GGTCGGTGCA GCGAATGGCG CGTCGATCGC GCGCAAGACC
TCGTTCCTGA AGGATCGTCT CGGTCAGAAG CTGTTCAAGG ATGGCATCCG CATCGTCGAT
GATCCGCTGC GCAAGCGCGG CTTGCGTTCG CAGGCGTTCG ACGCCGAGGG CGTTGCGGTC
AAGCCACTCT CGATCGTCGA CGATGGCGTG CTGACGTCGT GGCTGCTGGA TTGCGCCACC
GCGCGCGAAC TCGGCCTCGC CACCACCGGC CACGCGCATC GCGGCGTGTC GTCGTCGCCG
TCGCCGGGCC CGTACAATCT GCATCTCGAA GCCGGCCCGC TCAGCCCGGC CGAGCTGATA
GCCGACATCA AGCAGGGCTT CTACGTCACC GATCTGATCG GCTCCGGCGT CAACGGCGTC
ACCGGCGACT ATAGCCGCGG CGCCGCCGGG TTCTGGATCG AAAACGGCCA GCGCACCTAC
GCGGTCAGCG AAGTCACCAT CGCCGGACAC CTGATCGACA TGTACAAGAC GCTGACGCCG
GCCAGCGACC TGACCTTCCG CTACGGCGTC AATGCGCCGA CGCTGCGGAT CGAGGGGCTG
ACGATTGCCG GACGCTAA
|
|---|
| Protein sequence | MNSSPSARSP ASPPVDSALF DQSALSDLAQ RLVEAARRAG ADQADAVAVR GVSHGVEVRD
GRMQESERSE GDDVGLRVIV GRRQAVVSTN DISGDAVTKL AERAVAMARV APDDKYVGLA
DPELLAHDFP ELDLLDPNTP STAELERRAR AAEAAALAVP GINKSGGASA SSGIGGMVLV
TSTGFQGSFL RSSHSISMTA IAGEGTGMER DYEYTTAPHA SDLMSPEEVG RVAGERTAAR
VGPRKVETCK VPVVFDPRVA GSLVGHLVGA ANGASIARKT SFLKDRLGQK LFKDGIRIVD
DPLRKRGLRS QAFDAEGVAV KPLSIVDDGV LTSWLLDCAT ARELGLATTG HAHRGVSSSP
SPGPYNLHLE AGPLSPAELI ADIKQGFYVT DLIGSGVNGV TGDYSRGAAG FWIENGQRTY
AVSEVTIAGH LIDMYKTLTP ASDLTFRYGV NAPTLRIEGL TIAGR
|
|---|
| |