| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1321 |
|---|
| Symbol | |
|---|
| ID | 6408978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1389163 |
|---|
| End bp | 1390656 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642711220 |
|---|
| Product | FAD linked oxidase domain protein |
|---|
| Protein accession | YP_001990336 |
|---|
| Protein GI | 192289731 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCATTC TGATGCCGGA GCCGGATCAG TCGGTGCTGG CCCGTCGCGA CGAGATCATC
GCGGCCTTGC GCAAGATCGT GCCGGGCGAG GGCGTGATCT CCAGTGCCGC GGAAATGAAA
CCCTACGAGT CCGACGGCCT GATGGCGTAT CGGCAGCCGC CGATGGTCGT CGTATTACCG
AGCACGACCA AACAGGTTTC CGAGGTGCTG CGCTATTGCC ACCAGAACGG CATCAAGGTG
GTGCCGCGTG GCTCCGGCAC CTCGCTGTCC GGCGGCGCGC TGCCGCTCGC CGACGGCGTG
CTGCTCGGCC TCGGCAAGTT CAAGCGGATC CGCGAGATCG ACTTCGATAA TCGCGCGGTG
GTGGTCGAGC CGGGCGTCAC CAATCTGGCG ATCAGCCAGG CGGTCGATCA CGCCGGCTTC
TACTACGCGC CTGATCCGTC GTCGCAGATC GCCTGTTCGA TCGGCGGCAA CATCGCCGAG
AATTCTGGCG GCGTGCACTG CCTGAAATAC GGCATGACCA CCAACAACGT CCTCGGCTGC
GAAATCGTGC TGATGACCGG CGAGATCCTC AAGATCGGCG GCAAGGCGGC CGAATGCGCT
GGCTACGATC TGATGGGCGT GATCACCGGT TCAGAGGGGC TGCTCGGCGT CATCACCGAA
GTCACCGTGC GGATCCTGCG CAAGCCGGAA ACGGCGCGGG CACTGATGAT CGGCTTCCAG
AGCGTCGAGG CGGCCGGACA GTGTGTGGCC GACGTCATCA GCGCCGGCAT CATTCCGGGA
GGCATGGAGA TGATGGACAA GCCGGCGATT CACGCCGCCG AAGCCTTCGT TCATGCCGGC
TACCCGCTTG ACGTCGAGGC GCTGCTGATT ATCGAGCTCG ACGGTCCGCA AGTCGAGGTC
GATGAACTGA TCAGCCGTGT CGAGGCGATA GCGCTCGGCT GCGGCTCGAC CACCTGCCAG
ATCTCCACCA GCGAGCAGCA GCGGCTATTG TTCTGGAGCG GCCGCAAGGC GGCGTTCCCG
GCGGTGGGAC GAATCTCGCC GGACTATCTG TGCATGGACG GCACGATTCC GCGCAAACAG
CTGCCGCTGG TGCTGCGGCG GATGAACGAG ATGTCCGAGA AATACGGCCT GCGCGTCGCC
AACGTATTCC ACGCCGGCGA CGGCAATCTG CATCCGCTGA TCCTGTATGA CGCCAACAAG
CCAGGTGAGC AGGACGCGGC CGAAGCCTTC GGGGCAGACA TCCTCAAGCT GTGTGTCGAG
GTCGGCGGCG TGCTGACCGG CGAGCACGGG GTCGGGATCG AGAAGCGCGA TCTGATGCCG
GAGATGTTCT CCGACATCGA TCTCAACCAG CAACAGCGGC TGAAATGCGC GTTCGACTCC
GAAGGTCTGC TCAACCCCGG CAAAGTGTTC CCGACGCTGC ACCGCTGCGC CGAGCTCGGA
CGTATGCATG TCCACAAAGG CCAATTGCCG TTCCCGGATA TTCCGCGGTT CTGA
|
|---|
| Protein sequence | MTILMPEPDQ SVLARRDEII AALRKIVPGE GVISSAAEMK PYESDGLMAY RQPPMVVVLP
STTKQVSEVL RYCHQNGIKV VPRGSGTSLS GGALPLADGV LLGLGKFKRI REIDFDNRAV
VVEPGVTNLA ISQAVDHAGF YYAPDPSSQI ACSIGGNIAE NSGGVHCLKY GMTTNNVLGC
EIVLMTGEIL KIGGKAAECA GYDLMGVITG SEGLLGVITE VTVRILRKPE TARALMIGFQ
SVEAAGQCVA DVISAGIIPG GMEMMDKPAI HAAEAFVHAG YPLDVEALLI IELDGPQVEV
DELISRVEAI ALGCGSTTCQ ISTSEQQRLL FWSGRKAAFP AVGRISPDYL CMDGTIPRKQ
LPLVLRRMNE MSEKYGLRVA NVFHAGDGNL HPLILYDANK PGEQDAAEAF GADILKLCVE
VGGVLTGEHG VGIEKRDLMP EMFSDIDLNQ QQRLKCAFDS EGLLNPGKVF PTLHRCAELG
RMHVHKGQLP FPDIPRF
|
|---|
| |